Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16730 587 / 0 HEB2 hypersensitive to excess boron 2, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009771 [exp] 1229 / 0 AT3G16730 603 / 0.0 hypersensitive to excess boron 2, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G010480 [exp] 676 / 0 AT3G16730 634 / 0.0 hypersensitive to excess boron 2, unknown protein Potri.008G219100 [exp] 670 / 0 AT3G16730 611 / 0.0 hypersensitive to excess boron 2, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06278 [flax] [poplar] CNDH2_N Condensin II complex subunit CAP-H2 or CNDH2, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10024756 pacid=23159569 polypeptide=Lus10024756 locus=Lus10024756.g ID=Lus10024756.BGIv1.0 annot-version=v1.0 ATGAATACCCTCAAAGATAATTCATCTAACAGAATCCATACAGTTCAGGCCGAGCGAGACCTAGAGGCGAATTGGGAGGTCGATCTTGCCAGAAAGCTCG AGGACTACCTGCTCAAGATTTGTTCTGGTGAAATTTCTGCAACTGAAGAGGACGCTGCTCATATATCCATCAATTTCGCTGAAGCTGCTTTGCTGCTTCA GGGTTCGGTTCAGGTGTATAGCAGGAAAGTTGAGTATCTTTACAACTTGGTTTTACATGCTTTGGATTTCCTCTCCGAGAAGAGGCAGCAGGGAGAGTTA GAAGGATCGACCGGGCAACCTGAAAAGGCTGCTTCAAGTTCCGGTATTAATGATGAAGATGATCGATTTTGGAATTTAGACGACATCCATGTGGAACCAA GAAATTGTTTGGATACTTCAACCAGCAAAGATGCTTGGTTCTACCATTTCACAAAGCCACCGGCTAATTTAGTCGTTCTTGAAGCTGATTGCTTGGATAC CAGTGGCGATGGAGGGGAACTGGAGTCATATCTACTAGCTTGCAGTGATCTCTATCGGGATTTTATCCTCTTAGACCCGTGTGATTCTCCTTCAGTAAAT GAATATGTAGAAGAAGAGGGTACTGGAGTTGGAACCACATATAAGGGAAGCTCAACTCGTAAAGGCGTTCATTCCTCCACAAAACGCAATGGTGCAACAG CACGGAGGTCATCTCTTGGGAAGAACCATGATGCTCATTGCAATCAGTCTTCAATCCCTGATTGTGTTTTGCAGGACGATAAATGTGATGTGAATTCTGG ACCTTGTAAAGATGGTAACTTTTCAGGCTGTAATGAAGGGTTTGATATGGATGATATGTATACTTCACCTGGAAACTTGGATGACATAGATTTAGATGAA CATGAAACTGATCCATGGAAGCCTTTGAATCCTCACGAACCTGGGGACTTAAAAGTGAAACCTTTCAAACGAGTAGCTCCAATAAAGCATGCGGGGAACG TGATGAGGCTGGCATCTGTGGCTGCATTATTTCCACTTGCAAAGATGCATGGCCCTGTTAGTTCTGAGCTCAAAGGCATGTGGGAAATACGCCAGAAGAC CTGCAATGAGCACAAGAACTCACAGTCCCAATCTGTCCCTTTGTATCAAAAGTTACGAGAAGTACTTGCTGGTGGAGGGAAGAACAACATGGATTGTATT CATCAGTCCAGCAATGAAAATTGGGACAATGAAGACGACAATGGTGTCCCTGGTTTTGATGAACCATTTGGTGAAATGCCAAAATCTACATTTATGGATG AAGATTTGCCTCGTCAGCATGATAAGGATTTTAACTCTGCTTCCCGCTTTGATGCTGATGACCCCTTTGGACAAGGAGAACCAAGTTCCCAAGCAAGCCT GGAGGATCTTTGTCGCTCGCACCTTGATGCTCTGCTTGCTAATATAGCTGAAACTGAGAAGCAGACAGAGCTAGCTGCTCGGGTGTCGTCATGGAAACAG AAAATTGAGCATAACCTCGAAGTGCAAGATTCACGGACGCCATTTGACATCCATGCCTATGGTGAGAGAATTATGGACAGATTATCTGTTGAACCAGAGA GGGAGAACATCAGATCCTTTGCTGATATTGTCAGCGGCCAAGAAAAGCATGATGTTGCCCGTACATTTTCTGCTATGCTTCAGTTGGTGAACAATGGAGA TATTGATCTGGATAAGAGTGGGAACTCACTATGCTACACCGTTGTGAACCCCTTCCGTGTTAGGCTCCTAAAAAAGGATGGGAGACAGGCGGAGAGAAAG TTCAAGATGTCAAAAAAGAGAGTGAGATCGCCTTTGAGAAAAGGACCCAACAAAAAGGGAGGTGAGGACAAAATTCAGAGTAAGAGATTCCCAAGCAGCA GTAGCAATTCACCATCAGAAAATGGATCATCTTTAGTGAGAACAAGGTCCAACTCCAAATTTGCTGCAAAGCTTCGGAAGGTTGGTGAGGTAAGGTGCAA CAGTCCAGAGGGAAAGAGGAGAAGAAGATCGCAAGTAGACTTGAACTCTGCAACTTGA
AA sequence Show only first row Show all	>Lus10024756 pacid=23159569 polypeptide=Lus10024756 locus=Lus10024756.g ID=Lus10024756.BGIv1.0 annot-version=v1.0 MNTLKDNSSNRIHTVQAERDLEANWEVDLARKLEDYLLKICSGEISATEEDAAHISINFAEAALLLQGSVQVYSRKVEYLYNLVLHALDFLSEKRQQGEL EGSTGQPEKAASSSGINDEDDRFWNLDDIHVEPRNCLDTSTSKDAWFYHFTKPPANLVVLEADCLDTSGDGGELESYLLACSDLYRDFILLDPCDSPSVN EYVEEEGTGVGTTYKGSSTRKGVHSSTKRNGATARRSSLGKNHDAHCNQSSIPDCVLQDDKCDVNSGPCKDGNFSGCNEGFDMDDMYTSPGNLDDIDLDE HETDPWKPLNPHEPGDLKVKPFKRVAPIKHAGNVMRLASVAALFPLAKMHGPVSSELKGMWEIRQKTCNEHKNSQSQSVPLYQKLREVLAGGGKNNMDCI HQSSNENWDNEDDNGVPGFDEPFGEMPKSTFMDEDLPRQHDKDFNSASRFDADDPFGQGEPSSQASLEDLCRSHLDALLANIAETEKQTELAARVSSWKQ KIEHNLEVQDSRTPFDIHAYGERIMDRLSVEPERENIRSFADIVSGQEKHDVARTFSAMLQLVNNGDIDLDKSGNSLCYTVVNPFRVRLLKKDGRQAERK FKMSKKRVRSPLRKGPNKKGGEDKIQSKRFPSSSSNSPSENGSSLVRTRSNSKFAAKLRKVGEVRCNSPEGKRRRRSQVDLNSAT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16730		HEB2	hypersensitive to excess boron...		Lus10024756 [exp]	0	1
AT4G14310			Transducin/WD40 repeat-like su...		Lus10011802 [exp]	1.4	0.9626
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10036244 [exp]	5.7	0.9544
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Lus10036151 [exp]	7.5	0.9397
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10004453 [exp]	7.7	0.9449
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10024822 [exp]	9.0	0.9498
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10017491 [exp]	12.6	0.9392
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10003750 [exp]	14.0	0.9369
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10019866 [exp]	14.1	0.9405
AT3G10180			P-loop containing nucleoside t...		Lus10012103 [exp]	14.4	0.9388
AT3G16730		HEB2	hypersensitive to excess boron...		Lus10009771 [exp]	14.5	0.9360

Compare expression of checked genes

Lus10024756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.