Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08460 250 / 2e-82 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT1G77770 231 / 4e-75 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G68140 211 / 5e-67 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT3G24740 157 / 2e-45 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT4G31410 153 / 2e-44 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G15430 124 / 9e-34 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G80220 107 / 3e-27 Protein of unknown function (DUF1644) (.1) AT2G26050 92 / 7e-22 Protein of unknown function (DUF1644) (.1) AT3G25910 92 / 7e-21 Protein of unknown function (DUF1644) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009772 [exp] 434 / 4e-155 AT4G08460 256 / 3e-85 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10020957 [exp] 234 / 8e-76 AT1G68140 309 / 1e-104 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10004940 [exp] 234 / 2e-75 AT1G68140 319 / 4e-108 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10025356 [exp] 228 / 4e-74 AT1G68140 282 / 3e-95 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10022809 [exp] 175 / 2e-52 AT3G24740 351 / 1e-120 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10011876 [exp] 172 / 3e-50 AT3G24740 358 / 5e-122 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10043292 [exp] 162 / 2e-47 AT3G25910 282 / 2e-93 Protein of unknown function (DUF1644) (.1) Lus10019436 [exp] 160 / 6e-47 AT3G25910 277 / 3e-91 Protein of unknown function (DUF1644) (.1) Lus10026950 [exp] 158 / 3e-46 AT4G31410 363 / 2e-126 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G088700 [exp] 297 / 3e-100 AT4G08460 245 / 2e-80 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.005G172300 [exp] 271 / 3e-90 AT4G08460 219 / 2e-70 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.003G021800 [exp] 240 / 2e-77 AT1G68140 315 / 2e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.001G208800 [exp] 236 / 1e-76 AT1G68140 312 / 6e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.018G070500 [exp] 161 / 4e-47 AT3G25910 246 / 2e-79 Protein of unknown function (DUF1644) (.1) Potri.006G154300 [exp] 160 / 9e-47 AT3G25910 152 / 8e-43 Protein of unknown function (DUF1644) (.1) Potri.002G216600 [exp] 160 / 1e-46 AT3G24740 334 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.003G060800 [exp] 158 / 5e-45 AT3G25910 188 / 3e-55 Protein of unknown function (DUF1644) (.1) Potri.006G275400 [exp] 154 / 9e-45 AT4G31410 311 / 4e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.018G006400 [exp] 153 / 4e-44 AT4G31410 331 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF07800 [flax] [poplar] DUF1644 Protein of unknown function (DUF1644)
Representative CDS sequence Show only first row Show all	>Lus10024758 pacid=23159573 polypeptide=Lus10024758 locus=Lus10024758.g ID=Lus10024758.BGIv1.0 annot-version=v1.0 ATGACAAAAGCTAAGAAGGTCTCTGGCATGACTGATTCTGGGTATGACAGAGCTACCCCTCGTCCGTTGTCCCTTATCCATAGAAATAAGGCTAAGAAGC ATCGTACCTCAAAGGAAAGCCGTTGTAAAGACGCAGCCAAAAAGGAATGGGGAGGTGCAACTTGTTCAGTTTGTCTGGAGTACCCTCACAACGCTATACT CCTGCTGTGTTCTTCTTATGGCAAGGGTTGTCATCCATATATGTGTGCTACTGGGCGACAGTTTTCCAACTGTCTTGAGCAGTACAAGAAAGCCTACACA ACCGAAGGGATACAACAGCAGGACAGGTCAGGACACCATTTGAATTTTATCTCAGGCGGCATGCAGCTGAAGGAGAAAGTACAAGTTCCAGAGCTTCTAT GCCCGCTTTGTCGAGGACAGGTGAAGGGTTGGACGGTAGTGGAAGCAGCTCGGAAGTATCTAAATGGGAAAAAAAGATCGTGCATGCTGGATAACTGTTC ATATGTTGGATCTTATAGACAACTAAAGAAGCACGTGAAAGCAAAGCACCCATTGGGATGTGCCCGAGCAGTGGATCCTGTGCTTGAAAAGAAATGGAAG ACTCTGGAACTTGAGAGCGAGCGGAATGATGTGATAAGTACGGTTCTATCATCGACACCTGGAGCAATGGTGCTTGGAGATTACGTGATTGAGCCAGGTG CTGCTGGAATGTACGATGACTACAATGATGAGGATGAGCTAGTGGATGATGATGGTTTCTACCCTTTGTTTGATGGCTATAGGATGAGGCATGCAGCATC AGCTAGCTCTGCAGCATTACCAGGAAGCAGTCTCCACAGAATGCTTTTTGGAAGGACTCGAAGGTTTGGACGAGGTGTCAGACGTGGGTTTCGCAGGTAG
AA sequence Show only first row Show all	>Lus10024758 pacid=23159573 polypeptide=Lus10024758 locus=Lus10024758.g ID=Lus10024758.BGIv1.0 annot-version=v1.0 MTKAKKVSGMTDSGYDRATPRPLSLIHRNKAKKHRTSKESRCKDAAKKEWGGATCSVCLEYPHNAILLLCSSYGKGCHPYMCATGRQFSNCLEQYKKAYT TEGIQQQDRSGHHLNFISGGMQLKEKVQVPELLCPLCRGQVKGWTVVEAARKYLNGKKRSCMLDNCSYVGSYRQLKKHVKAKHPLGCARAVDPVLEKKWK TLELESERNDVISTVLSSTPGAMVLGDYVIEPGAAGMYDDYNDEDELVDDDGFYPLFDGYRMRHAASASSAALPGSSLHRMLFGRTRRFGRGVRRGFRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08460			Protein of unknown function (D...		Lus10024758 [exp]	0	1
AT2G43780			unknown protein		Lus10035718 [exp]	4.9	0.8158
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030583 [exp]	5.3	0.8357
AT1G65032			unknown protein		Lus10020483 [exp]	5.7	0.7980
AT2G42680		MBF1A, ATMBF1A	ARABIDOPSIS THALIANA MULTIPROT...		Lus10000056 [exp]	6.9	0.8435
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10033806 [exp]	7.9	0.8081
AT3G52050			5'-3' exonuclease family prote...		Lus10035938 [exp]	9.2	0.7863
AT1G26750			unknown protein		Lus10016383 [exp]	13.1	0.7968
AT2G43780			unknown protein		Lus10037305 [exp]	15.1	0.7748
AT5G04000			unknown protein		Lus10042034 [exp]	16.0	0.7851
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10000920 [exp]	17.7	0.8286

Compare expression of checked genes

Lus10024758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.