Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60300 292 / 2e-96 RWD domain-containing protein (.1.2) AT4G13490 42 / 0.0004 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009773 [exp] 575 / 0 AT3G60300 315 / 2e-105 RWD domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G138000 [exp] 320 / 2e-107 AT3G60300 340 / 8e-116 RWD domain-containing protein (.1.2) Potri.014G048000 [exp] 156 / 6e-46 AT3G60300 163 / 6e-49 RWD domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF05773 [flax] [poplar] RWD RWD domain
Representative CDS sequence Show only first row Show all	>Lus10024759 pacid=23159559 polypeptide=Lus10024759 locus=Lus10024759.g ID=Lus10024759.BGIv1.0 annot-version=v1.0 ATGGCGGACGAAGAAATTCTGTTAGAAGTAGAGGCCGTCCAAGCGATGTACCCAGATGATTGCGTCGTCCTCAATCCCTTCCCTCCTCATCTCCACCTCC ACTGTAAGCCGCGAACCGCAGAGATTTCTTCTCAACAGTTTGTGGAAGCATTGATTAGCATCAGAGCAGGCATACAGGTAACCTGCTGCATACTTGTAAC TAAATTTTCAACCAGATTGTATTTACTTCAACGTTCATTAGTCTGTCACGGAGAAAACCTCCAACCTGCTACTAACCTGGTTAATTTCCTTTTCAAGTAT CCAGAGGAACCACCCAGTATCATTATTACAGAGTCCAAGGGTCTTGATGAACTAAGGCAAAAGGTTCTATTAACCAGTATACGTAACAAAGCACTAGAGC TCTCTTCATGCTTCATGCTGGTAGCACTGTGTGAGGCAGCAGTGGAGCAGCTCTCCACCATGAATAGCCCGGATGGTGATTGCCCATTGTGTTTATACCC TTTGGTTCAAGAAAAAGAAGAGCGTGAAATCTTGCCATTTATGAAGTTGATGTCATGTTTTCATTGCTATCACAGTGAATGCATTATAAGGTGGTGGACT TGGCTTCAAAAGCAGCAGGAGAACACGAGTGGTTCCTCAATCAGAGTTGAAAATAAGATAGCACCAGAAAACAGCATGGGTCAATGTCCAGTGTGTCGAA AGGTTTTCCATGCCAAGGATTTGAAACATGTGCTTGATTTGGTTGGAACTCATTCCTCTCACTTGAGTTTGATGAAAAAGGAAGGTAAGGATGATGAAGA GGAAGAGACGGTGGTTGATTGTGAGTCAGAGCAAATTAGAAGAGAGAAATATGAGGCTATACTAAAGTTACAAGAAGAAAAGAAAGGGCTGATCGAACCA AAAAAGAGTATTGCGATTGTGCCTGGCATGTTTCTTCCACAGCCTACTACTAGTACTACTACTACTACTACTTCATCAGAGCAACAAACAGAAATGCCAC CTACTGATGATTCTTCAGAGCGGCATGGTGGCATAGTTAGGCGACGGAGGAAAAACCACTGTAATCAGCAGCACAACTCTCAAAGACAGGTGGTGGTGAA GCAACAATGGGCAAGGAAAGGAAACGCTACATCAAATTGA
AA sequence Show only first row Show all	>Lus10024759 pacid=23159559 polypeptide=Lus10024759 locus=Lus10024759.g ID=Lus10024759.BGIv1.0 annot-version=v1.0 MADEEILLEVEAVQAMYPDDCVVLNPFPPHLHLHCKPRTAEISSQQFVEALISIRAGIQVTCCILVTKFSTRLYLLQRSLVCHGENLQPATNLVNFLFKY PEEPPSIIITESKGLDELRQKVLLTSIRNKALELSSCFMLVALCEAAVEQLSTMNSPDGDCPLCLYPLVQEKEEREILPFMKLMSCFHCYHSECIIRWWT WLQKQQENTSGSSIRVENKIAPENSMGQCPVCRKVFHAKDLKHVLDLVGTHSSHLSLMKKEGKDDEEEETVVDCESEQIRREKYEAILKLQEEKKGLIEP KKSIAIVPGMFLPQPTTSTTTTTTSSEQQTEMPPTDDSSERHGGIVRRRRKNHCNQQHNSQRQVVVKQQWARKGNATSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60300			RWD domain-containing protein ...		Lus10024759 [exp]	0	1
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10041638 [exp]	1.0	0.8766
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10012532 [exp]	3.0	0.8337
AT5G61040			unknown protein		Lus10021155 [exp]	6.9	0.8338
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10035437 [exp]	7.1	0.8216
AT1G54570			Esterase/lipase/thioesterase f...		Lus10033848 [exp]	8.7	0.7864
AT4G37440			unknown protein		Lus10014864 [exp]	9.2	0.8189
AT1G01710			Acyl-CoA thioesterase family p...		Lus10037853 [exp]	12.2	0.8084
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10037055 [exp]	13.1	0.8095
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10024003 [exp]	13.4	0.8228
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10031051 [exp]	19.1	0.8173

Compare expression of checked genes

Lus10024759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.