Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36390 195 / 4e-61 Co-chaperone GrpE family protein (.1.2) AT5G17710 181 / 4e-55 EMB1241 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) AT4G26780 54 / 6e-08 MGE2, AR192 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) AT5G55200 45 / 2e-05 MGE1 mitochondrial GrpE 1, Co-chaperone GrpE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042696 [exp] 240 / 1e-77 AT1G36390 210 / 5e-66 Co-chaperone GrpE family protein (.1.2) Lus10029654 [exp] 235 / 1e-75 AT5G17710 215 / 2e-67 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Lus10003741 [exp] 229 / 3e-73 AT5G17710 222 / 3e-70 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Lus10028034 [exp] 229 / 3e-73 AT5G17710 222 / 3e-70 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Lus10000783 [exp] 51 / 5e-07 AT5G55220 336 / 5e-109 trigger factor type chaperone family protein (.1) Lus10043180 [exp] 50 / 1e-06 AT4G26780 281 / 2e-93 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Lus10032565 [exp] 49 / 3e-06 AT4G26780 299 / 1e-100 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Lus10010247 [exp] 47 / 1e-05 AT5G55200 270 / 7e-91 mitochondrial GrpE 1, Co-chaperone GrpE family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G090000 [exp] 267 / 1e-88 AT1G36390 233 / 8e-76 Co-chaperone GrpE family protein (.1.2) Potri.005G171201 [exp] 235 / 3e-76 AT1G36390 213 / 7e-68 Co-chaperone GrpE family protein (.1.2) Potri.013G067900 [exp] 172 / 2e-51 AT5G17710 313 / 9e-106 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Potri.015G065800 [exp] 52 / 2e-07 AT4G26780 291 / 3e-97 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Potri.011G089000 [exp] 40 / 0.001 AT4G26780 284 / 1e-94 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01025 [flax] [poplar] GrpE GrpE
Representative CDS sequence Show only first row Show all	>Lus10024760 pacid=23159519 polypeptide=Lus10024760 locus=Lus10024760.g ID=Lus10024760.BGIv1.0 annot-version=v1.0 ATGTGGATTGTTAGAAAACTGAAATTCGGCTCGAAATTTGATGCGCACGACGTGTCAGGTCGTGTGAACCACACGCCGTGTGGCCTTAAACCGGGGTTGA GCCGTCTGATTTTAGACCAAACTAAGTCAACCCAAATCCGTAAATTGACTGTTAGTCAGCCGTTTAGTTTGAGCATTGACCCGTTGACCGTCAAATTCTG TTTGTTGACCGCAAATGAAGAAAATGAGAAGAGAACTGCTACACCAACCCAAAACGTAAATCTGGAAGACCAGTATAGTTTTAAGAATCTTCTTAAGCTG TACAGGGACGCTATTCTTCATCTCAATCAGAAGACAATATCCGAAGTTGAATCTGAGATAACTATCATAGAAACCAAGAATATTGAATTACTACACAAGG TTGAAGCTCTATCAGCAGAGACAACATCTGGAAAGGAGAACTACATTCGCCTGCAAGCAGACTTTGAGAATGCTAGGAAGAGATTGGAGAAAAGTAGATT TAGGGTGAGGAGTGATGCCAAACGAGAAGTAATTGAGAGCCTTCTTCCCATGGTTGACGGATTTGAGAAGGCCAAGCAACAATTAAAGCCGGAAACAGAA AAGGAAAAGAAAATCAATGCAAGCTATCAGGGAATATACAAGCAATTTGTTGAGATCATGAAGTCCTTAGACGTTGCTCTTGTGCCAACCGTTGGAATGG TGTTTGATCCTGCTGTTCATGAGGCCATTGGTCGTGAGGAGTCAGCGGAGTACAGGGAGGGGACTGTCATTCAAGAATTACGGCGTGGTTTTGTTCTTGG GGACCGGCTTTTAAGACCAGCAAAGGTAAAGGTTTCTGCAGGACCTGGGATTAAAAGATCTGTAGCAGGTGCTGACGCTGGTGAGCAACCTGCAACAGCT ACATAA
AA sequence Show only first row Show all	>Lus10024760 pacid=23159519 polypeptide=Lus10024760 locus=Lus10024760.g ID=Lus10024760.BGIv1.0 annot-version=v1.0 MWIVRKLKFGSKFDAHDVSGRVNHTPCGLKPGLSRLILDQTKSTQIRKLTVSQPFSLSIDPLTVKFCLLTANEENEKRTATPTQNVNLEDQYSFKNLLKL YRDAILHLNQKTISEVESEITIIETKNIELLHKVEALSAETTSGKENYIRLQADFENARKRLEKSRFRVRSDAKREVIESLLPMVDGFEKAKQQLKPETE KEKKINASYQGIYKQFVEIMKSLDVALVPTVGMVFDPAVHEAIGREESAEYREGTVIQELRRGFVLGDRLLRPAKVKVSAGPGIKRSVAGADAGEQPATA T

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36390			Co-chaperone GrpE family prote...		Lus10024760 [exp]	0	1
AT2G43630			unknown protein		Lus10005311 [exp]	2.0	0.8757
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10002422 [exp]	2.4	0.8694
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10010003 [exp]	2.4	0.8633
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039122 [exp]	4.5	0.8484
AT3G26360			Ribosomal protein S21 family p...		Lus10006466 [exp]	12.4	0.7722
					Lus10029579 [exp]	15.7	0.8107
AT2G40300		ATFER4	ferritin 4 (.1)		Lus10007523 [exp]	17.3	0.7794
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10004195 [exp]	19.0	0.7600
AT4G34290			SWIB/MDM2 domain superfamily p...		Lus10002106 [exp]	20.9	0.8448
AT3G21200		PGR7	proton gradient regulation 7 (...		Lus10037330 [exp]	21.6	0.7935

Compare expression of checked genes

Lus10024760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.