Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010798 [exp] 106 / 1e-27 AT5G27260 61 / 5e-10 unknown protein Lus10032816 [exp] 99 / 1e-26 AT2G24960 57 / 1e-09 unknown protein Lus10006034 [exp] 98 / 8e-26 AT5G27260 42 / 2e-04 unknown protein Lus10028091 [exp] 98 / 1e-25 ND / Lus10004397 [exp] 99 / 2e-25 AT5G27260 77 / 6e-16 unknown protein Lus10022993 [exp] 90 / 7e-23 ND / Lus10026427 [exp] 87 / 3e-22 ND / Lus10022379 [exp] 89 / 5e-22 AT5G27260 74 / 1e-14 unknown protein Lus10001769 [exp] 85 / 1e-21 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024762 pacid=23159547 polypeptide=Lus10024762 locus=Lus10024762.g ID=Lus10024762.BGIv1.0 annot-version=v1.0 ATGAACAATAAGCCACTCGGTCTCTGGGATGATTTCTGCATCATATTTGGGTTAGACCAAGCACTTGGTGTAGATGCTGCCCAGCCCTCAGATGCAGCAA GCAAAATGCTGTCAGGTGCAAGCGCCTCCGATTTCATGGAGGAACAAACCGATCCGACTGATTCCTGCACCATTCCACCTGACTCAGACCATGACGCAGT GATAGAAGATATCCTCAATCAAGGCGATCTAGCAGTGAAACGTCAGTATTTGTATGATGAGCTTGCAAACTTCACCATGCTCATTGTCAGCCAAAGAACA AGGGCAATGAGGCACCTCAATCGTGATGATGGTGATGTTGTTACCTTCTTTCAGTTACCAACTGAAGAGGAGAAGATGGAATTTATTTGGACGATTCTTG AGTAA
AA sequence Show only first row Show all	>Lus10024762 pacid=23159547 polypeptide=Lus10024762 locus=Lus10024762.g ID=Lus10024762.BGIv1.0 annot-version=v1.0 MNNKPLGLWDDFCIIFGLDQALGVDAAQPSDAASKMLSGASASDFMEEQTDPTDSCTIPPDSDHDAVIEDILNQGDLAVKRQYLYDELANFTMLIVSQRT RAMRHLNRDDGDVVTFFQLPTEEEKMEFIWTILE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024762 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	3.5	1.0000
					Lus10026042 [exp]	4.5	1.0000
AT5G24070			Peroxidase superfamily protein...		Lus10027049 [exp]	5.7	1.0000
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10027513 [exp]	6.0	1.0000
					Lus10027530 [exp]	6.3	1.0000
					Lus10002313 [exp]	6.5	1.0000
					Lus10003831 [exp]	7.5	1.0000
AT5G64790			O-Glycosyl hydrolases family 1...		Lus10005788 [exp]	8.0	1.0000
					Lus10023520 [exp]	8.4	1.0000
					Lus10006010 [exp]	8.5	1.0000

Compare expression of checked genes

Lus10024762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.