Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02040 113 / 9e-28 C2H2ZnF C2H2-type zinc finger family protein (.1) AT4G35280 110 / 3e-27 C2H2ZnF DAZ2 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) AT2G17180 101 / 7e-24 C2H2ZnF DAZ1 DUO1-ACTIVATED ZINC FINGER 1, C2H2-like zinc finger protein (.1) AT3G60580 81 / 8e-17 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G03510 80 / 2e-16 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G45120 78 / 1e-15 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G28200 76 / 5e-15 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G19580 74 / 1e-14 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT5G04390 75 / 2e-14 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G10470 75 / 3e-14 C2H2ZnF C2H2-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009775 [exp] 796 / 0 AT1G02030 128 / 5e-33 C2H2-like zinc finger protein (.1) Lus10028173 [exp] 295 / 1e-94 AT1G02040 124 / 4e-32 C2H2-type zinc finger family protein (.1) Lus10042872 [exp] 290 / 1e-92 AT2G45120 124 / 7e-32 C2H2-like zinc finger protein (.1) Lus10021637 [exp] 94 / 3e-20 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1) Lus10015740 [exp] 82 / 1e-16 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1) Lus10004316 [exp] 79 / 4e-16 AT5G04340 134 / 3e-38 COLD INDUCED ZINC FINGER PROTEIN 2, zinc finger of Arabidopsis thaliana 6 (.1) Lus10023912 [exp] 79 / 6e-16 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10022610 [exp] 77 / 1e-15 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10003463 [exp] 77 / 7e-15 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066200 [exp] 399 / 8e-135 AT1G02040 129 / 1e-33 C2H2-type zinc finger family protein (.1) Potri.002G143600 [exp] 388 / 2e-130 AT1G02040 124 / 1e-31 C2H2-type zinc finger family protein (.1) Potri.009G166200 [exp] 103 / 4e-24 AT4G35280 258 / 4e-85 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.004G205300 [exp] 102 / 8e-24 AT4G35280 236 / 2e-76 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.010G229400 [exp] 85 / 6e-18 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1) Potri.002G119300 [exp] 84 / 8e-18 AT1G27730 186 / 8e-59 salt tolerance zinc finger (.1) Potri.008G032300 [exp] 84 / 2e-17 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1) Potri.014G017300 [exp] 81 / 8e-17 AT1G27730 189 / 4e-60 salt tolerance zinc finger (.1) Potri.006G121600 [exp] 79 / 3e-16 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.016G098100 [exp] 77 / 3e-15 AT2G28200 182 / 6e-56 C2H2-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024763 pacid=23159523 polypeptide=Lus10024763 locus=Lus10024763.g ID=Lus10024763.BGIv1.0 annot-version=v1.0 ATGGCACTAATTGTGGATCAACAATCGAAAGGAGAGCTAAAGCATTTTTGTAAGATCTGCAAGAAGGGATTCAGGTGTGGGAGAGCTCTTGGAGGACACA TGAGAGCTCATGGAATTGGTGATGATATTCCTAATCACATTGAAAAAGAGAAAGAGGAAGAGGAAGATGAGGATGTGGAAGATGACAACAACTACAACAA CGGCATGGGTCCGGAAAACAAAAGAATGCATGCTTTAAGAACAAATCCAAATCGACAAAAGAGCACTCGTATATGTGAGAATTGTGGCAAAGAATTTATG TCTTGGAAATCATTTTTTGACCATGAAAATGGAAAATGTAGCTCAATTGATCATCATGAAGCAGATAAAGAAGAATATGAGACGCCTGTGAGGAATGGAG CTACTGGTAATAATTGGTTGAAAAGGAAGAGATCATTCAGAGCTCAAATAATTGGCAACCAAAATAACTATGATTGTCCATCAAGTGAAGAAGAGGATCT TGCCAACTGTCTCATGATGTTATCTAATGCCTCCGTATATAATCCTACTATGCTTGAGCCTGAAGAATCTTCTGCTTCAGCAAGCAAGGATGATGAAGCA TATCATCAAATAAATTATCCTTCTGTTCCGCCAATGTCATCATATCGGCCATGCATGATTGACAAGGCCAAAGGAATAGTAGCAACGACAGCAGGTACTA AAGGTGTATTCGAATGCAAAGCATGCAAAAAGGTGTTTAACTCCCACCAAGCATTAGGTGGACATAGAGCTAGTCACAAAAAAGTTAAAGGTTGTTTCGC TGCCAGGTTGGACAACCATCACAATGATGACAACTTGGTTGAGGATGACGTCACCACCACACAACAACAACAACGAGAAGAACAATATGACAATCTAAAA ACCACTTCATCATCATCTAGCTTCCCGTTAGATAATAATAACATTGTTTCTACCTACTCATCATCTAAGAGGAAATCTAAAGTTCATGAGTGTTCAATTT GCCACCGAGTCTTCTCGTCGGGTCAAGCCTTGGGTGGCCATAAACGTTGCCATTGGATCACCTCCAATTCATCATCACCCACCACTATAAGTGTCGATCA TGCTACAACATTAGCCGCTAGATTCCATCAGTTTCAAGATCATCTTCTCCAAATTCAACATAGACCAAAGTTTACTACTACAACTACCAACTGCAACAAC AACAATAACAACAAGACTGAGTATGGAGCAGTTGATCTCACTCTTGATCTCAATATTAATCCAACTTCAAACACGGGTGTTGTTTCCCATCCTCCTCCCA CAAGCTTTGACTATCTACAATCTCGGATTTGCAAAGAAAATAATAAAGACTTCAATCATCATGATGAAGGGTGTAGGCCGACCAACCTCAACAAGGATGA TGGAAATGGGAAAGTTGTAGAAACCGAGGATGATGAAGCGGATAGTAAGGTGAAGCTAGCAAAGCTAAATGATCTCAAGGATATAAAGGCTAATGGAAAA TCCTCGCCGTGGTTACAAGTTGGGATTGGTTCCACCACAAACACTTGA
AA sequence Show only first row Show all	>Lus10024763 pacid=23159523 polypeptide=Lus10024763 locus=Lus10024763.g ID=Lus10024763.BGIv1.0 annot-version=v1.0 MALIVDQQSKGELKHFCKICKKGFRCGRALGGHMRAHGIGDDIPNHIEKEKEEEEDEDVEDDNNYNNGMGPENKRMHALRTNPNRQKSTRICENCGKEFM SWKSFFDHENGKCSSIDHHEADKEEYETPVRNGATGNNWLKRKRSFRAQIIGNQNNYDCPSSEEEDLANCLMMLSNASVYNPTMLEPEESSASASKDDEA YHQINYPSVPPMSSYRPCMIDKAKGIVATTAGTKGVFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNHHNDDNLVEDDVTTTQQQQREEQYDNLK TTSSSSSFPLDNNNIVSTYSSSKRKSKVHECSICHRVFSSGQALGGHKRCHWITSNSSSPTTISVDHATTLAARFHQFQDHLLQIQHRPKFTTTTTNCNN NNNNKTEYGAVDLTLDLNINPTSNTGVVSHPPPTSFDYLQSRICKENNKDFNHHDEGCRPTNLNKDDGNGKVVETEDDEADSKVKLAKLNDLKDIKANGK SSPWLQVGIGSTTNT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10024763 [exp]	0	1
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10002611 [exp]	4.2	0.6818
AT1G61320			FBD / Leucine Rich Repeat doma...		Lus10010664 [exp]	10.8	0.5964
AT5G12060			Plant self-incompatibility pro...		Lus10030964 [exp]	13.2	0.5964
AT5G27260			unknown protein		Lus10032874 [exp]	15.2	0.5964
AT3G54200			Late embryogenesis abundant (L...		Lus10006764 [exp]	17.0	0.5964
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10006893 [exp]	18.7	0.5964
AT1G63640			P-loop nucleoside triphosphate...		Lus10009028 [exp]	20.1	0.5964
					Lus10009317 [exp]	21.5	0.5964
AT4G17920			RING/U-box superfamily protein...		Lus10035368 [exp]	22.8	0.5964
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10039361 [exp]	24.1	0.5964

Compare expression of checked genes

Lus10024763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.