Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60450 271 / 1e-91 Phosphoglycerate mutase family protein (.1) AT3G60440 251 / 2e-83 Phosphoglycerate mutase family protein (.1) AT3G60420 244 / 3e-81 Phosphoglycerate mutase family protein (.1.2.3) AT1G78050 46 / 1e-05 PGM phosphoglycerate/bisphosphoglycerate mutase (.1) AT3G50520 40 / 0.0007 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009779 [exp] 389 / 8e-139 AT3G60450 234 / 9e-78 Phosphoglycerate mutase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G141000 [exp] 334 / 3e-116 AT3G60450 338 / 9e-118 Phosphoglycerate mutase family protein (.1) Potri.014G054800 [exp] 316 / 8e-109 AT3G60450 326 / 3e-112 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10024765 pacid=23159576 polypeptide=Lus10024765 locus=Lus10024765.g ID=Lus10024765.BGIv1.0 annot-version=v1.0 ATGGAATCTTCTTCTCCGGCGACGAACAGTGACTGCCAGCAGTACCAGAACGTCGTCGTAATGCGACACGGAGACCGGATGGACAATTTCGATCCGAACT GGACCAAGAGCGCCGCCAGGCCCTGGGACCCACCCCTCGTTGATGCTGGCCTCGGCAGGGCATTGGACGCCGGGCGTAAGCTCCGGACTGATCTCGGTTT CCCTATCCACCGCGTCTTCGTCTCTCCTTTTCTCCGCTGCATCCAGACGGCCGCCCAAGCTGTGACAGCTCTCTGCGCCTTTGACGATCATCCCAAAGTC AAGGTTGCTATTGAGTTTGGATTGTGCGAGATGTTGAATTTGGAAGCTATTAGAAAAGACTGTGTTCCTCAAAACGGAGATTTCGGGTTCAATATCCCTG AGCTGGAGGCACTGTTACCAGCTGGGACAGTGGATCACACCGTTAAACGGGTATATGAAGAGATGCCTCAATGGGGAGAGTCAGCAATGGCTGCAAGGAC AAGATACACAGAAATCATCAAGGCCCTTGCTGATAGATACCCTAACGAAAACTTGTTGCTTGTCTCACATGGCGAGTCTCAATTTTTTAATTGTGGAGAA GGAGTAGGAGTTTCATTCTCAGCATTCTCAGTAGATAAGATGGTGTATGAAGTAGAGTACTGCGGTCATACCAAATTGAGGAGGCCGATTCTTAGTCAAG CGGCGGGGGAGTTCGAGGTGAATGGATACAGTGGGATTCTTTACTGCTCTTCCAAGCCCTAG
AA sequence Show only first row Show all	>Lus10024765 pacid=23159576 polypeptide=Lus10024765 locus=Lus10024765.g ID=Lus10024765.BGIv1.0 annot-version=v1.0 MESSSPATNSDCQQYQNVVVMRHGDRMDNFDPNWTKSAARPWDPPLVDAGLGRALDAGRKLRTDLGFPIHRVFVSPFLRCIQTAAQAVTALCAFDDHPKV KVAIEFGLCEMLNLEAIRKDCVPQNGDFGFNIPELEALLPAGTVDHTVKRVYEEMPQWGESAMAARTRYTEIIKALADRYPNENLLLVSHGESQFFNCGE GVGVSFSAFSVDKMVYEVEYCGHTKLRRPILSQAAGEFEVNGYSGILYCSSKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60450			Phosphoglycerate mutase family...		Lus10024765 [exp]	0	1
AT3G03773			HSP20-like chaperones superfam...		Lus10024119 [exp]	5.6	0.7563
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Lus10008135 [exp]	13.6	0.6925
AT3G15140			Polynucleotidyl transferase, r...		Lus10024133 [exp]	21.1	0.7285
AT3G29760			Haloacid dehalogenase-like hyd...		Lus10027135 [exp]	22.3	0.7343
AT3G23880			F-box and associated interacti...		Lus10027780 [exp]	27.1	0.6979
AT1G11930			Predicted pyridoxal phosphate-...		Lus10015557 [exp]	34.9	0.6716
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Lus10022570 [exp]	37.5	0.7069
AT2G01520		ZCE1, MLP328	\(Zusammen-CA\)-enhanced 1, ML...		Lus10028887 [exp]	41.4	0.7179
					Lus10021186 [exp]	41.9	0.6860
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10019449 [exp]	43.4	0.7000

Compare expression of checked genes

Lus10024765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.