Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03100 462 / 6e-162 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT2G46710 393 / 2e-134 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT5G22400 382 / 5e-130 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT3G11490 368 / 5e-125 rac GTPase activating protein (.1) AT1G08340 337 / 2e-114 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009778 [exp] 624 / 0 AT4G03100 456 / 7e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10030213 [exp] 387 / 2e-131 AT2G46710 440 / 1e-151 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10005998 [exp] 385 / 3e-131 AT2G46710 460 / 8e-160 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10014213 [exp] 374 / 1e-126 AT5G22400 462 / 4e-160 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10022700 [exp] 371 / 3e-125 AT5G22400 459 / 6e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10020625 [exp] 286 / 2e-93 AT5G22400 362 / 4e-122 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10004864 [exp] 221 / 5e-68 AT5G22400 326 / 6e-108 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135570 [exp] 498 / 1e-175 AT4G03100 500 / 6e-176 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.002G176800 [exp] 395 / 1e-134 AT2G46710 477 / 3e-166 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.009G162900 [exp] 383 / 3e-130 AT5G22400 457 / 3e-158 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.014G103600 [exp] 382 / 2e-129 AT2G46710 478 / 2e-166 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.016G078200 [exp] 380 / 1e-128 AT5G22400 482 / 7e-168 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.006G211200 [exp] 379 / 4e-128 AT5G22400 461 / 2e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.004G201600 [exp] 367 / 9e-124 AT5G22400 429 / 3e-147 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0409 [flax] [poplar] GAP PF00620 [flax] [poplar] RhoGAP RhoGAP domain CL0409 [flax] [poplar] PF00786 [flax] [poplar] PBD P21-Rho-binding domain
Representative CDS sequence Show only first row Show all	>Lus10024768 pacid=23159548 polypeptide=Lus10024768 locus=Lus10024768.g ID=Lus10024768.BGIv1.0 annot-version=v1.0 ATGACAGGGCTGGTGATGCTGACCAAGGGGGGTGGTTGCGGCGGCGTGGTTGACGGTGGTTGTAAAGGCTTGGCAGCAAGGGCCACCAGCAAAGTAAGCC GCGAGGAGGAGGAAGAGCGCAACCAGCAGCTCTCTACTGTGGCTGTTCTACTGGCCGCTATAAGAAAATCTCTTGTTTCCTCATGCCGGATTGAGAATGG CGAAGACTTGATGTCGTCTTCCTCCGCCACCAGCGCCGCCGTGCGTCACATGGATATCGGCTGGCCGACGAACGTACAGCACATTACCCATGTCACCTTT GATCGATTCAACGGTTTTCTGGGTCTTCCTGTTGAGTTCGAGGTTGAGATTCCATCTCGAGTTCCCAGCGCCAGTGCTAGTGTATTTGGCGTGTCAGCAG AATCAATGCAGTGCTGCTATGACAACAAGGGAAATAGCGTACCCACAATTCTTCTACTAATGCAGGAGAAATTATATACACAAGATGGGCTCAAGGCAGA AGGAATATTCCGCATAAACCCAGAGAATGGGCAAGAAGAGGATGTAAGGGATCAGCTGAACAGGGGAATGGTGCCGGATGATATTGATGTTCATTGTTTA GCAGGGCTTATAAAAGCTTGGTTCAGGGAACTTCCAAGTGGGGTGTTGGATGGCCTTTCCCCTGAACATGTTCTGGAGTGCAACACTGAAGAGGAGTGTG TTGAATTGGTGAAGCAATTAAAGCCCACCGAAGCTGCACTCCTCAATTGGGCTGTTGATCTAATGACAGATGTTGTTCTTGAAGAAGATCACAACAAGAT GAATGCTAGAAATATTGCAATGGTCTTTGCTCCAAACATGACTCAGATGTCTGACCCATTGACGGCCCTGATGCATGCCGTGCAAGTCATGAACTTACTC AAAACCTTGATCACAAAGAATCTTCGAGAGCGTGAAGAGATGAGCAGTGAAGGATATTCACCCATGTCTGATGATGAAAACGACGACGACGACCAAGATT GTAACAGCCAGCAGGACATTGAACGAAGAAGACGGGGATCATCTGATTATGACTATGATGAACACTACAATCCTGACAGTGAAGAAGAAGACGAACATGA AGTTGAGTCATTAGTTGAAATAGAACAAGTGTTTTTGAACGCATTGGATGCAAGTATGGACACTAGCAATGAACAACCATCAGATGGATTATCTGGAGAG AGCTTCAGCAGAGACACTCTGAAATGA
AA sequence Show only first row Show all	>Lus10024768 pacid=23159548 polypeptide=Lus10024768 locus=Lus10024768.g ID=Lus10024768.BGIv1.0 annot-version=v1.0 MTGLVMLTKGGGCGGVVDGGCKGLAARATSKVSREEEEERNQQLSTVAVLLAAIRKSLVSSCRIENGEDLMSSSSATSAAVRHMDIGWPTNVQHITHVTF DRFNGFLGLPVEFEVEIPSRVPSASASVFGVSAESMQCCYDNKGNSVPTILLLMQEKLYTQDGLKAEGIFRINPENGQEEDVRDQLNRGMVPDDIDVHCL AGLIKAWFRELPSGVLDGLSPEHVLECNTEEECVELVKQLKPTEAALLNWAVDLMTDVVLEEDHNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLL KTLITKNLREREEMSSEGYSPMSDDENDDDDQDCNSQQDIERRRRGSSDYDYDEHYNPDSEEEDEHEVESLVEIEQVFLNALDASMDTSNEQPSDGLSGE SFSRDTLK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03100			Rho GTPase activating protein ...		Lus10024768 [exp]	0	1
AT2G26180		IQD6	IQ-domain 6 (.1)		Lus10013522 [exp]	1.7	0.9604
AT5G03870			Glutaredoxin family protein (....		Lus10021353 [exp]	3.9	0.9548
AT5G45700			Haloacid dehalogenase-like hyd...		Lus10007321 [exp]	4.0	0.9550
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10005444 [exp]	4.9	0.9394
AT5G16250			unknown protein		Lus10026857 [exp]	7.0	0.9413
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10004945 [exp]	8.0	0.9523
AT5G01910			unknown protein		Lus10014179 [exp]	8.5	0.9468
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Lus10035915 [exp]	9.2	0.9316
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Lus10041617 [exp]	11.0	0.9476
AT1G07820			Histone superfamily protein (....		Lus10015492 [exp]	11.2	0.9290

Compare expression of checked genes

Lus10024768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.