Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03115 347 / 6e-120 Mitochondrial substrate carrier family protein (.1) AT3G54110 147 / 8e-42 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) AT1G14140 146 / 1e-41 Mitochondrial substrate carrier family protein (.1) AT5G58970 144 / 1e-40 ATUCP2 uncoupling protein 2 (.1.2) AT4G24570 133 / 2e-36 DIC2 dicarboxylate carrier 2 (.1) AT2G22500 129 / 6e-35 UCP5, ATPUMP5, DIC1 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) AT5G09470 112 / 2e-28 DIC3 dicarboxylate carrier 3 (.1) AT5G19760 91 / 6e-21 Mitochondrial substrate carrier family protein (.1) AT5G66380 88 / 9e-20 ATFOLT1 folate transporter 1 (.1) AT1G25380 87 / 5e-19 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009777 [exp] 144 / 3e-41 AT4G03115 140 / 4e-40 Mitochondrial substrate carrier family protein (.1) Lus10021123 [exp] 143 / 3e-40 AT3G54110 521 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10017187 [exp] 142 / 7e-40 AT3G54110 501 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10030443 [exp] 140 / 3e-39 AT1G14140 421 / 3e-149 Mitochondrial substrate carrier family protein (.1) Lus10035538 [exp] 140 / 4e-39 AT3G54110 512 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10027755 [exp] 138 / 2e-38 AT3G54110 515 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10040709 [exp] 137 / 5e-38 AT5G58970 512 / 0.0 uncoupling protein 2 (.1.2) Lus10016445 [exp] 127 / 3e-34 AT5G58970 493 / 1e-177 uncoupling protein 2 (.1.2) Lus10009270 [exp] 93 / 4e-23 AT2G22500 204 / 8e-67 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135530 [exp] 402 / 1e-141 AT4G03115 422 / 2e-149 Mitochondrial substrate carrier family protein (.1) Potri.010G165900 [exp] 143 / 2e-40 AT1G14140 447 / 1e-159 Mitochondrial substrate carrier family protein (.1) Potri.006G095500 [exp] 142 / 5e-40 AT3G54110 513 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.001G247800 [exp] 142 / 7e-40 AT5G58970 456 / 3e-163 uncoupling protein 2 (.1.2) Potri.016G110100 [exp] 141 / 1e-39 AT3G54110 483 / 5e-174 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.007G113000 [exp] 134 / 7e-37 AT4G24570 404 / 4e-142 dicarboxylate carrier 2 (.1) Potri.017G045150 [exp] 133 / 1e-36 AT2G22500 457 / 3e-163 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.002G104400 [exp] 132 / 5e-36 AT2G22500 427 / 1e-151 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045100 [exp] 132 / 5e-36 AT2G22500 451 / 6e-161 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G047800 [exp] 131 / 9e-36 AT4G24570 435 / 2e-154 dicarboxylate carrier 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10024769 pacid=23159536 polypeptide=Lus10024769 locus=Lus10024769.g ID=Lus10024769.BGIv1.0 annot-version=v1.0 ATGGATTGTTCCGACTCGTCAAATTCATTGCTTTCAGATAAGCAAAATCAAGTCAACGAGAAGCTGCAATCAGCCATCTCGCCTTCCCATTTGATCATTA ACCATTTCGGCAGCAGCGGAGCATCGGTCGCTGTAGCAACGGCATGCACCCACCCCTTAGATGTGCTTAAAGTTCGACTGCAGATGCAACTTGTTGGTCA GAGAGGTCCTCTGAATAGAATGGGACACATCTTTTTCCAAATTCTGAAAAATGATGGACCTAAGGGATTCTACCTTGGGCTGACACCAGCTTTGACAAGG TCAGTGCTTTATGGAGGTCTTCGTTTAGGTCTTTATGAGCCATCAAAGTATGCTTGTAACATGGCTTTTGGATCCACCAATATCTTTGCCAAGATTGCCT CAGGAGCTTTTGCTGGTGCACTTGCAACTGCACTCACTAACCCTACTGAAGTCTTGAAGGTTCGTCTGCAAATGAATACGAATCAGGGGCATGGTGGGAC ATTGGGCGAGATCCGAAAAATTGTTTCCGAAGAGGGAGTGAGAGCTCTTTGGAAGGGCGTTGGTCCTGGAATGACTAGAGCTGCTGCTCTCACAGCTTCA CAGTTAGCAACATATGATGAAACCAAGCGGTTTCTTACTGGGTGGACAAATCTGGAAGAAGGATTATATCTACACCTGATCGCAAGTACTGTGGCAGGTG GGGTGAGTACCTTAATTACAGCTCCAATAGACACAATCAAAACTCGTCTTATGCTTCAACGCGATTGTGGAAGAGCTGGCAACTATAGGAATGGATTTGA CTGTGCATATAAGGTTGTGCATACAGAAGGGCTTCGTGGTCTTTATAAGGGGGGCCTTACTGTGTTTGCAAGATTGGGTCCTCAAACTACAATCACTTTC ATTTTGTGTGAGAAGCTACGACAACTAGCTGGGCTGGATGCAATCTAG
AA sequence Show only first row Show all	>Lus10024769 pacid=23159536 polypeptide=Lus10024769 locus=Lus10024769.g ID=Lus10024769.BGIv1.0 annot-version=v1.0 MDCSDSSNSLLSDKQNQVNEKLQSAISPSHLIINHFGSSGASVAVATACTHPLDVLKVRLQMQLVGQRGPLNRMGHIFFQILKNDGPKGFYLGLTPALTR SVLYGGLRLGLYEPSKYACNMAFGSTNIFAKIASGAFAGALATALTNPTEVLKVRLQMNTNQGHGGTLGEIRKIVSEEGVRALWKGVGPGMTRAAALTAS QLATYDETKRFLTGWTNLEEGLYLHLIASTVAGGVSTLITAPIDTIKTRLMLQRDCGRAGNYRNGFDCAYKVVHTEGLRGLYKGGLTVFARLGPQTTITF ILCEKLRQLAGLDAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03115			Mitochondrial substrate carrie...		Lus10024769 [exp]	0	1
AT5G01260			Carbohydrate-binding-like fold...		Lus10002495 [exp]	3.7	0.9340
AT5G44090			Calcium-binding EF-hand family...		Lus10008247 [exp]	3.9	0.9286
AT1G30140			unknown protein		Lus10024751 [exp]	4.2	0.9370
AT1G13440		GAPC2, GAPC-2	GLYCERALDEHYDE-3-PHOSPHATE DEH...		Lus10022332 [exp]	4.7	0.9182
AT1G04390			BTB/POZ domain-containing prot...		Lus10002546 [exp]	5.3	0.9156
AT3G12100			Cation efflux family protein (...		Lus10004168 [exp]	6.2	0.9167
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	6.3	0.9243
AT2G32415			Polynucleotidyl transferase, r...		Lus10031563 [exp]	6.6	0.8982
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10003406 [exp]	6.6	0.9122
AT4G39952			Pentatricopeptide repeat (PPR)...		Lus10010688 [exp]	7.7	0.9187

Compare expression of checked genes

Lus10024769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.