Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23660 258 / 1e-85 MTN3, SWEET12, AtSWEET12 homolog of Medicago truncatula MTN3 (.1) AT5G13170 255 / 2e-84 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT3G48740 254 / 3e-84 SWEET11, AtSWEET11 Nodulin MtN3 family protein (.1) AT5G50790 237 / 3e-77 SWEET10, AtSWEET10 Nodulin MtN3 family protein (.1) AT5G50800 236 / 7e-77 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT4G25010 235 / 9e-77 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1) AT2G39060 230 / 5e-75 SWEET9, AtSWEET9 Nodulin MtN3 family protein (.1) AT1G21460 166 / 4e-50 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT4G15920 150 / 6e-44 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT3G16690 147 / 3e-43 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009782 [exp] 565 / 0 AT5G23660 261 / 8e-87 homolog of Medicago truncatula MTN3 (.1) Lus10005935 [exp] 324 / 5e-111 AT5G50800 235 / 3e-76 Nodulin MtN3 family protein (.1) Lus10040901 [exp] 315 / 1e-107 AT5G13170 236 / 8e-77 senescence-associated gene 29 (.1) Lus10023249 [exp] 256 / 2e-85 AT5G50790 246 / 2e-81 Nodulin MtN3 family protein (.1) Lus10008861 [exp] 256 / 3e-85 AT5G50790 246 / 1e-81 Nodulin MtN3 family protein (.1) Lus10032553 [exp] 240 / 3e-78 AT5G50790 279 / 9e-94 Nodulin MtN3 family protein (.1) Lus10015754 [exp] 238 / 1e-77 AT5G13170 289 / 7e-98 senescence-associated gene 29 (.1) Lus10000310 [exp] 236 / 6e-77 AT5G13170 295 / 3e-100 senescence-associated gene 29 (.1) Lus10016742 [exp] 235 / 3e-76 AT5G50790 291 / 2e-98 Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G101700 [exp] 270 / 2e-90 AT5G23660 312 / 3e-107 homolog of Medicago truncatula MTN3 (.1) Potri.015G101400 [exp] 257 / 1e-85 AT5G50790 276 / 7e-93 Nodulin MtN3 family protein (.1) Potri.019G030500 [exp] 254 / 3e-84 AT2G39060 272 / 3e-92 Nodulin MtN3 family protein (.1) Potri.015G101600 [exp] 252 / 2e-83 AT5G50790 276 / 1e-92 Nodulin MtN3 family protein (.1) Potri.001G060900 [exp] 247 / 2e-81 AT5G13170 294 / 9e-100 senescence-associated gene 29 (.1) Potri.003G166800 [exp] 247 / 2e-81 AT5G13170 290 / 3e-98 senescence-associated gene 29 (.1) Potri.015G101500 [exp] 245 / 1e-80 AT5G50790 291 / 6e-99 Nodulin MtN3 family protein (.1) Potri.012G103200 [exp] 239 / 4e-78 AT5G50790 230 / 1e-74 Nodulin MtN3 family protein (.1) Potri.013G013800 [exp] 178 / 2e-54 AT4G15920 214 / 3e-69 Nodulin MtN3 family protein (.1) Potri.013G013900 [exp] 169 / 2e-50 AT4G15920 205 / 4e-65 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10024770 pacid=23159531 polypeptide=Lus10024770 locus=Lus10024770.g ID=Lus10024770.BGIv1.0 annot-version=v1.0 ATGGCGCCAGCACTTCATAGTCATCATCTAGCCCTTGTATTCGGCCTCCTTGGCAATATAGTGTCCTTCTTTGTATTCTTGGCTCCATTGCCAACGTTTT ACAGAATAGTGAAGGAGAAATCAACACAAGGGTTCCAGTCTATACCATACTCAGTGGCACTATTCAGTGCAATGTTGTATCTGTATTATGCTTCTCTCAA GGTAGATGCATTGATGCTCATCACCATCAACTCCGTTGGCTGCCTCATCGAATCAACTTACCTCATCATTTTCCTCATTTACGCCCCTAAATCTGTCAGG ATGCAGACAGCAAGGCTAATAATGTTGTTCAACTTGGCGGTGTTTGGGCTAATAGTGATACTGACGTCGTTATTTGCACCTCACCCGCTCAGAGTTCACA TAGTGGGTTGGATATGTGCAGTCTTCTCCGTCTGCGTTTTTGCTGCACCACTCACTATCATCCGGCTAGTGATAAAGACCAAGAGCGTAGAGTTCATGCC TTTCTCCTTGTCCATGTTGCTCACACTCTGCGCTGTGTTTTGGCTTATCTATGGACTCGCCTTGGATGACTACTATATTGCAACGCCCAACATATTGGGA TTTGGATTCGGTTTGACGCAGATGGTGTTATACTTGATTTACCGTAACAAGGGGAAAACAGAAGTTTTGCCAGCAGCTGATAATAGTACTAGATCTCAAC CCAACAAGGATGTTAATAGTGCTGATGATGCTGAAGAGAAATCGAAGAATGTGGTGATTGCTGTAACTATTACAAAGTTGGAAGAAGCAAAAGATAAAGG AAACCAAGGAGGTGGCGATGAGACCTTGGTGGACGAGCCCAACAAAGAAGAAAGGGCAAGCGACTTCAACGTATGA
AA sequence Show only first row Show all	>Lus10024770 pacid=23159531 polypeptide=Lus10024770 locus=Lus10024770.g ID=Lus10024770.BGIv1.0 annot-version=v1.0 MAPALHSHHLALVFGLLGNIVSFFVFLAPLPTFYRIVKEKSTQGFQSIPYSVALFSAMLYLYYASLKVDALMLITINSVGCLIESTYLIIFLIYAPKSVR MQTARLIMLFNLAVFGLIVILTSLFAPHPLRVHIVGWICAVFSVCVFAAPLTIIRLVIKTKSVEFMPFSLSMLLTLCAVFWLIYGLALDDYYIATPNILG FGFGLTQMVLYLIYRNKGKTEVLPAADNSTRSQPNKDVNSADDAEEKSKNVVIAVTITKLEEAKDKGNQGGGDETLVDEPNKEERASDFNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Lus10024770 [exp]	0	1
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Lus10009782 [exp]	1.0	0.9461
AT4G12840			Protein of unknown function (D...		Lus10008748 [exp]	4.6	0.8817
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10004733 [exp]	5.1	0.9097
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10026820 [exp]	5.5	0.8623
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10009138 [exp]	6.3	0.8930
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024648 [exp]	6.3	0.8940
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10026515 [exp]	9.2	0.8858
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10007796 [exp]	11.1	0.8979
					Lus10024257 [exp]	11.4	0.7903
					Lus10024633 [exp]	15.3	0.7551

Compare expression of checked genes

Lus10024770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.