Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03080 175 / 6e-51 BSL1 BRI1 suppressor 1 (BSU1)-like 1 (.1) AT1G08420 165 / 2e-47 BSL2 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) AT2G27210 165 / 2e-47 BSL3 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) AT1G03445 124 / 5e-33 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1) AT5G59160 85 / 6e-20 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT2G39840 83 / 4e-19 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT3G46820 82 / 6e-19 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT5G43380 82 / 1e-18 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3) AT1G64040 82 / 1e-18 TOPP3 type one serine/threonine protein phosphatase 3 (.1) AT4G11240 80 / 5e-18 TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013357 [exp] 166 / 1e-47 AT1G08420 1713 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10004100 [exp] 165 / 2e-47 AT1G08420 1686 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10008369 [exp] 165 / 2e-47 AT1G08420 1747 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10011827 [exp] 87 / 3e-20 AT2G39840 513 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10016489 [exp] 86 / 3e-20 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10021872 [exp] 86 / 4e-20 AT2G39840 523 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10042559 [exp] 85 / 9e-20 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10022019 [exp] 85 / 1e-19 AT2G39840 565 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10001555 [exp] 84 / 1e-19 AT5G59160 470 / 2e-169 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135800 [exp] 179 / 2e-52 AT4G03080 1441 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.001G215700 [exp] 165 / 2e-47 AT2G27210 1626 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.009G016900 [exp] 165 / 2e-47 AT2G27210 1588 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.013G045900 [exp] 88 / 8e-21 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.019G018000 [exp] 86 / 4e-20 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G166300 [exp] 84 / 1e-19 AT2G39840 545 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.009G037700 [exp] 83 / 2e-19 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.001G245700 [exp] 83 / 3e-19 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.008G060800 [exp] 82 / 7e-19 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.006G113100 [exp] 82 / 7e-19 AT2G39840 488 / 4e-175 type one serine/threonine protein phosphatase 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024771 pacid=23159558 polypeptide=Lus10024771 locus=Lus10024771.g ID=Lus10024771.BGIv1.0 annot-version=v1.0 ATGGATGCAGGTTCCATAATACTGATGGATCTTCTGTGGTCTGATCCTACAGAAAATGATAGTGTGGAAGGTTTAAGGCCAAATGCGAGAGGCCCTGGTC TTGTCACTTTCGGGCCTGACCGTGTAACAGATTTTTGTAAGAAGAACAAGTTGCAGCTGATTATTCGAGCACATGAATGTGTTATGGATGGATTTGAACG GTTTGCTCAAGGACAACTGATTACGTTATTTTCTGCTACGAATTACTGCGGTAAGAGAGACCTGACTAAAAATCACGAGTTTCCTTACAAAGATGTTCCT AATGTTTTGTGGTTCAGGGACTGCAAACAACGCGGGAGCCATACTAGTGGTTGGACGGGGATTGGTTGTGGTACCAAAGTTAATCCATCCATTGCCGCCA CCTCTTCAATCACCGGAAACATCTCCGGAGCGTATTGCAGAAGAGACATGGATGCAAGTAAGATTCGTCTAGTCTCCTCAAATATGTTCTTTCTTGTATC CTGCCGGTCTCATATTGTGGACATTCTCGCATTTTGA
AA sequence Show only first row Show all	>Lus10024771 pacid=23159558 polypeptide=Lus10024771 locus=Lus10024771.g ID=Lus10024771.BGIv1.0 annot-version=v1.0 MDAGSIILMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVTDFCKKNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGKRDLTKNHEFPYKDVP NVLWFRDCKQRGSHTSGWTGIGCGTKVNPSIAATSSITGNISGAYCRRDMDASKIRLVSSNMFFLVSCRSHIVDILAF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Lus10024771 [exp]	0	1
AT1G18720			Protein of unknown function (D...		Lus10001646 [exp]	2.0	0.7188
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10015050 [exp]	4.0	0.6593
AT5G17410			Spc97 / Spc98 family of spindl...		Lus10020227 [exp]	5.2	0.6047
					Lus10007681 [exp]	28.7	0.5868
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10010175 [exp]	28.8	0.5869
AT5G60250			zinc finger (C3HC4-type RING f...		Lus10036128 [exp]	31.6	0.5647
AT4G38660			Pathogenesis-related thaumatin...		Lus10013561 [exp]	35.0	0.5462
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Lus10013837 [exp]	35.2	0.5340
AT1G30320			Remorin family protein (.1)		Lus10038521 [exp]	42.6	0.5374
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Lus10008826 [exp]	43.3	0.5709

Compare expression of checked genes

Lus10024771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.