Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03080 443 / 2e-151 BSL1 BRI1 suppressor 1 (BSU1)-like 1 (.1) AT2G27210 407 / 3e-136 BSL3 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) AT1G08420 401 / 9e-134 BSL2 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) AT1G03445 305 / 1e-98 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1) AT5G59160 182 / 4e-56 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT3G46820 179 / 3e-55 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT2G39840 173 / 1e-52 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT5G27840 172 / 2e-52 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT2G29400 169 / 3e-51 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT5G43380 169 / 6e-51 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009783 [exp] 460 / 1e-158 AT2G27210 1281 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Lus10008369 [exp] 410 / 6e-137 AT1G08420 1747 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10004100 [exp] 406 / 1e-135 AT1G08420 1686 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10013357 [exp] 406 / 2e-135 AT1G08420 1713 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10016489 [exp] 180 / 2e-55 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10011827 [exp] 180 / 7e-55 AT2G39840 513 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10040259 [exp] 179 / 9e-55 AT2G39840 590 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10001555 [exp] 176 / 1e-54 AT5G59160 470 / 2e-169 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10004692 [exp] 178 / 2e-54 AT2G39840 596 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135800 [exp] 441 / 1e-150 AT4G03080 1441 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.002G213300 [exp] 436 / 1e-148 AT4G03080 1439 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.001G215700 [exp] 409 / 8e-137 AT2G27210 1626 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.009G016900 [exp] 405 / 4e-135 AT2G27210 1588 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.013G045900 [exp] 182 / 5e-56 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.009G037700 [exp] 180 / 3e-55 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.008G060800 [exp] 179 / 3e-55 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.019G018000 [exp] 180 / 4e-55 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.001G245700 [exp] 179 / 7e-55 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.016G142700 [exp] 177 / 4e-54 AT2G39840 493 / 1e-177 type one serine/threonine protein phosphatase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10024772 pacid=23159524 polypeptide=Lus10024772 locus=Lus10024772.g ID=Lus10024772.BGIv1.0 annot-version=v1.0 ATGCTCTCTCAGATCGAGTATCCAGAAAATGTTCACCTGATACGAGGAAACCATGAAGCTGCTGATATTAATGCACTCTTTGGTTTTCGCATTGAATGCA TTGAGAGAATGGGAGAGAGTGATGGGATATGGGCATGGACACGCTTCAATCAGCTCTTCAACTATCTTCCACTTGCAGCACTTGTTGAAAAGAAAATAAT ATGTATGCATGGGGGAATCGGCAGATCTATTACTTCAGTGGAACAGATTGAAAAACTCGAGAGACCCATAACCATGGATGCAGGTTCCATAATACTGATG GATCTTCTGTGGTCTGATCCTACAGAAAATGATAGTGTGGAAGGTTTAAGGCCAAATGCGAGAGGCCCTGGTCTTGTCACTTTCGGGCCTGATCGTGTAA CAGATTTTTGTAAGAAGAACAAGTTGCAGCTGATTATTCGAGCACATGAATGTGTTATGGATGGGTTTGAACGGTTTGCTCAAGGACAGCTGATTACGTT ATTTTCTGCTACGAATTACTGCGGGACTGCAAACAACGCGGGAGCCATACTAGTGGTTGGACGGGGATTGGTTGTGGTACCAAAGTTAATCCATCCATTG CCGCCACCTCTTCAATCACCGGAAACATCTCCGGAGCGTATTGCAGAAGAGACATGGATGCAAGAGCTTAACATCCAGAGACCACCAACTCCGACTCGGG GTCGCCCACAACCTGACCTTGACAGAAACTCACTTGCTTACATATGA
AA sequence Show only first row Show all	>Lus10024772 pacid=23159524 polypeptide=Lus10024772 locus=Lus10024772.g ID=Lus10024772.BGIv1.0 annot-version=v1.0 MLSQIEYPENVHLIRGNHEAADINALFGFRIECIERMGESDGIWAWTRFNQLFNYLPLAALVEKKIICMHGGIGRSITSVEQIEKLERPITMDAGSIILM DLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVTDFCKKNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPL PPPLQSPETSPERIAEETWMQELNIQRPPTPTRGRPQPDLDRNSLAYI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Lus10024772 [exp]	0	1
AT3G19260		LOH2, LAG1 HOMO...	LONGEVITY ASSURANCE GENE1 HOMO...		Lus10014055 [exp]	5.7	0.7095
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Lus10027113 [exp]	11.0	0.7141
AT1G76405			unknown protein		Lus10025160 [exp]	13.9	0.7155
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10005520 [exp]	18.5	0.7141
AT1G48320			Thioesterase superfamily prote...		Lus10043043 [exp]	18.8	0.6851
AT1G31500			DNAse I-like superfamily prote...		Lus10000006 [exp]	32.7	0.6843
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10022111 [exp]	32.9	0.6996
AT1G26100			Cytochrome b561/ferric reducta...		Lus10021715 [exp]	33.3	0.6678
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Lus10033990 [exp]	37.2	0.6925
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10042689 [exp]	37.3	0.6060

Compare expression of checked genes

Lus10024772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.