Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03080 809 / 0 BSL1 BRI1 suppressor 1 (BSU1)-like 1 (.1) AT1G03445 481 / 5e-162 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1) AT1G08420 444 / 3e-145 BSL2 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) AT2G27210 443 / 8e-145 BSL3 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) AT1G74150 85 / 3e-17 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G18610 82 / 4e-16 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G46820 77 / 2e-15 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT5G59160 77 / 4e-15 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT2G29400 73 / 6e-14 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT1G64040 72 / 2e-13 TOPP3 type one serine/threonine protein phosphatase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009783 [exp] 1003 / 0 AT2G27210 1281 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Lus10008369 [exp] 437 / 1e-142 AT1G08420 1747 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10013357 [exp] 438 / 2e-142 AT1G08420 1713 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10004100 [exp] 410 / 2e-132 AT1G08420 1686 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10016489 [exp] 72 / 2e-13 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10040742 [exp] 72 / 2e-13 AT5G59160 466 / 1e-166 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10001025 [exp] 71 / 6e-13 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10030163 [exp] 71 / 6e-13 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10040259 [exp] 70 / 1e-12 AT2G39840 590 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135800 [exp] 895 / 0 AT4G03080 1441 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.002G213300 [exp] 888 / 0 AT4G03080 1439 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.001G215700 [exp] 446 / 6e-146 AT2G27210 1626 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.009G016900 [exp] 439 / 5e-143 AT2G27210 1588 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.015G059400 [exp] 79 / 4e-15 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G245700 [exp] 76 / 1e-14 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.005G013000 [exp] 75 / 5e-14 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.009G037700 [exp] 72 / 1e-13 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.012G062100 [exp] 73 / 2e-13 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 72 / 6e-13 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024773 pacid=23159539 polypeptide=Lus10024773 locus=Lus10024773.g ID=Lus10024773.BGIv1.0 annot-version=v1.0 ATGGGTTCCAAGCCCTGGTTGTACCCTGCTCCTGCCTATCGCTCCCTGGAAACCTACTGGGATACCGATGAAGACGCCCCTGGTCCACGATGTGGTCACA CATTGACCTCCGTCGCCGCATCCAAGACTCATGGTCCTCGTCTCATCCTCTTTGGCGGTGCTACTGCCATCGAAGGCGGCGCTTCCTCCTCCGCCCCTGG CATCAGATTAGCTGGAGTCACTAATTCTGTTCATTCTTACGATGTTCTCACTCGAAAATGGACTAGAATTCAACCTGCCGGAGATCCCCCTTCCCCTAGA GCCGCCCACGCTGCCGCCGCTGTTGGTACTATGGTTGTTTTTCAGGGCGGCATTGGCCCTGCCGGCCACTCTACTGATGATCTCTATGTACTTGACTTGA CCAATGACAAGTATAAATGGCATCGAGTGGTTGTACAAGGGCAGGGACCAGGGCCTCGCTATGGCCATGTCATGGATTTGGTCGGCCAACGATACCTAGT TACCGTCAGTGGCAATGATGGCAAGAGAGTTCTATCTGATGCATGGACTTTGGATACTGCACAGAAGCCATATGCATGGCAGAGACTGAATCCTGAAGGT GATAAGCCTTCAGCTAGAATGTATGCAACAGCAAGTGCTCGTTCAGATGGCATGTTTTTGCTTTGTGGTGGTCGGGACATCTCTGGCGTGCCTCTTGGAG ATGCTTATGGACTTCTAATGCATAGAAATGGTCAGTGGGAATGGACTCTTGCCCCTGGAGTGTCTCCTTCACCTAGATATCAACATGCTGCAGTTTTTGT TGGTGCTCGTTTGCATGTAACCGGAGGCGTTTTGAGAGGAGGACGAGGGGTAGAAGGTGAAGCAGCTATTGCAGTCTTGGACACTGCTGCTGGTGTCTGG CTGGACAGGAATGGGCTAGTAACATCATCTAAAACTGGGAGAGGATTGGCTGACTATGATCCTTCTTTGGAGCTAATGCGTCGTTGTCGGCATGCATCTG CTTCCGTTGGAGTCCGTATATATGTCTATGGTGGTTTGAAAGGAGATGTACTTCTGGATGACTTTTTAGTTGCAGAAAACTCTGCACTTCAGGCTGACGG CAGCTCTCCTATATTAACATCTGAGAAGGCATCCCCTGTAACTAGTCCTAGATTAAATCACAGTGGGTTAGGTTCTTTTGGTGAAGCAGAGAGCCCTCCA TTTGGTAGTGTCAGCATGGATAAAATCTCAATGGAGAAATTGAGGGAGGCTTCTGCAGCTGAAGCGCAAGCTGCTAGTGCTGTCTGGCAAGCTGCTCAGG CATCTGTCCATTCCACTGAGGTTACGTCTGTGTCTGATGAGAATTCACAGGCAGCTGAGGCAACTTCGGATGGTAGTGATGTAGAGGCTGATGTTCGCCT TCATCCGAGAGCTGTTGTAGTTGCTAAAGAGGCTATAGGCAACTTAGGTGTATGGAAATTAGGTGGCATGGTTATATCTACATTACTGAGGCCTCGGAAC TGGAAAGCTCCAACAAATAGGAGGTTTTTTCTGGATTCTTATGAAATTGGTGAACTTTGTTACGCCGCTGAGCAGATATTTATGCATGAACCTACAGTTC TTCAGTTGAAAGCTCCTGTTAAGGTGTTTGGCGATCTCCATGGCCAATTTGGTGATTTGATGCGCCTCTTTGATGAATATGGATTTCCCTCCACAGCAGG AGACATCACGTAA
AA sequence Show only first row Show all	>Lus10024773 pacid=23159539 polypeptide=Lus10024773 locus=Lus10024773.g ID=Lus10024773.BGIv1.0 annot-version=v1.0 MGSKPWLYPAPAYRSLETYWDTDEDAPGPRCGHTLTSVAASKTHGPRLILFGGATAIEGGASSSAPGIRLAGVTNSVHSYDVLTRKWTRIQPAGDPPSPR AAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKYKWHRVVVQGQGPGPRYGHVMDLVGQRYLVTVSGNDGKRVLSDAWTLDTAQKPYAWQRLNPEG DKPSARMYATASARSDGMFLLCGGRDISGVPLGDAYGLLMHRNGQWEWTLAPGVSPSPRYQHAAVFVGARLHVTGGVLRGGRGVEGEAAIAVLDTAAGVW LDRNGLVTSSKTGRGLADYDPSLELMRRCRHASASVGVRIYVYGGLKGDVLLDDFLVAENSALQADGSSPILTSEKASPVTSPRLNHSGLGSFGEAESPP FGSVSMDKISMEKLREASAAEAQAASAVWQAAQASVHSTEVTSVSDENSQAAEATSDGSDVEADVRLHPRAVVVAKEAIGNLGVWKLGGMVISTLLRPRN WKAPTNRRFFLDSYEIGELCYAAEQIFMHEPTVLQLKAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Lus10024773 [exp]	0	1
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Lus10002572 [exp]	5.2	0.8486
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Lus10038534 [exp]	6.6	0.8781
AT3G63430			unknown protein		Lus10003090 [exp]	8.5	0.8625
					Lus10039387 [exp]	11.0	0.8583
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10011223 [exp]	13.6	0.8584
AT2G19090			Protein of unknown function (D...		Lus10020008 [exp]	15.9	0.8447
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10031331 [exp]	16.3	0.8319
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10026993 [exp]	25.5	0.8441
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10007206 [exp]	26.5	0.8596
AT2G27210		BSL3	BRI1 suppressor 1 (BSU1)-like ...		Lus10009783 [exp]	27.0	0.8538

Compare expression of checked genes

Lus10024773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.