Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77800 304 / 3e-90 PHD finger family protein (.1.2) AT2G31650 87 / 2e-17 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT1G05830 81 / 2e-15 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT4G27910 71 / 1e-12 SDG16, ATX4 SET domain protein 16 (.1) AT5G53430 70 / 3e-12 SET29, ATX5, SDG29 SET domain group 29 (.1) AT3G61740 64 / 2e-10 SDG14, ATX3 SET domain protein 14 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009785 [exp] 430 / 8e-139 AT1G77800 388 / 3e-115 PHD finger family protein (.1.2) Lus10026725 [exp] 80 / 3e-15 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 79 / 4e-15 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10019026 [exp] 65 / 1e-10 AT4G27910 1171 / 0.0 SET domain protein 16 (.1) Lus10012626 [exp] 47 / 6e-05 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10024778 [exp] 44 / 0.0006 AT1G77800 533 / 6e-174 PHD finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G089400 [exp] 447 / 3e-142 AT1G77800 939 / 0.0 PHD finger family protein (.1.2) Potri.005G171800 [exp] 439 / 8e-139 AT1G77800 522 / 2e-160 PHD finger family protein (.1.2) Potri.014G146300 [exp] 85 / 6e-17 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.002G232800 [exp] 84 / 1e-16 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.012G013900 [exp] 71 / 1e-12 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.015G014300 [exp] 70 / 3e-12 AT5G53430 1322 / 0.0 SET domain group 29 (.1) Potri.014G098400 [exp] 65 / 9e-11 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.011G103100 [exp] 64 / 1e-10 AT3G14740 339 / 1e-115 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.002G170600 [exp] 64 / 2e-10 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2) Potri.001G382500 [exp] 56 / 3e-08 AT3G14740 338 / 3e-115 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024777 pacid=23159535 polypeptide=Lus10024777 locus=Lus10024777.g ID=Lus10024777.BGIv1.0 annot-version=v1.0 ATGATGGGCAGGGGTCCCGGTAGAGGTTGTGGTACCGGCGAGATGCCTTGCCGCCCCAGTTGTAGAGTTATGGCGTTCAATTCCCAGGCCACTGAACCCG AGGTGCCAACCAGCATGATAACGGGTACAAATTGTCCACGGGGCGTTGATTTCTTCTCTCAGGCACGTAAAGTGTTGTGCGAGCGGTCTCCATTTGATGC TCCTGAAGATGTCTCTGGGACTTCTGTTTCAGCTAGCTCGTATTTGACTACTTTGCCTAGTGGATTAGCCAGTTTGTTGAGGAATTCTGAAAGCAGAAAA AGACGTAAAAAATCACATTCTAGTGCTGATAAGAAGTCATCCCGGGTAACTGAACGTTCCAAAGGAGCGAACATTTGGCTTGAGACTGAGGACTACTTTA GGGAATTGGCATTGGACGATATTGATTCTTTGTTTCAACTATGTTCTTCTCTTAGGTCCTTAGCTGCTATCAACTGTCTTTCGCTTCCATATATCCCAAA TGTTGAAAACACGAGAAGTGAGTTATTGTTTAACCAGGAAAACGTCAATTATGATATGAGCTCGTGTTTAGAGAACAGAAATGGAATGATTCCAACAAGA GAGGTGAAACAAGGACGACAGCATGTGGAAATTGACAATATGGGGGTTCAAATTAGTGAGACTGAACCCTTGCCTCCTGTCGCCTGTGGTAATGTCTCCC CTTCAGAGTTTTCTGGTAGTGTCTGTTGGGTTTTGAGCTGCAGGAATCGTAATTTGTTGACTTCAGAACGTCCTTCCAAGAAGCGCAAGCTTTTAGGCAG TGATGCTGGATTGGACAAGGTTTTGATTGGTTCACCTTGTGAAGGCGACTCATCAACATGTGATTTCTGCTGCAAGGGCAACTTGTGGAATGACTCGGAC AAGTTAATTGTTTGCTGTTCTTGCAATACTGCTGTCCATGGAAAATGTTATGGTGTGCAAGGTGATATACATGAGCCTTGGTTATGTACTAAATGTAAGA AGAACACAGAAGATAAAGATTCAGTAAAGCGACCATGTCTTCTTTGCCCAAAAATGGGAGGTGCCTCTAAACCAGTTGGTAACAGTAGTGACACTTCTGA AGCAGAGTTTGTGCACTTGTTTTGTTCTGTTTGGATGCCTGAGGTCTATGTGGAGGACCTCACCAAGATGGAGCCGATCATGAATCTTTCTGCTATCAAG GATATACATAAAAAATTAGTATGTAAGGTGTGCAAGGTGAAATGTGGCACTTGTGTCAGGTGCAGTCATGGAACTTGTAGAGCTGCTTTCCATCCCAGAT GTGCAAGGGAGGCAAAACACAGATTGGAGGTCTGGGGGAAGTATGGACATGATAGTGTTGAATTGCGTGCCTTTTGCTCAAAGCACTCAGGACTTCTTGG TGTGAAAGATAGTTTCGAAGTCGGAGAACATTCGTTGACTGTAAAATGTATTTCTGTTGCTGAAAATCTGGCAGAACAGATCCCAGATAAGCATCAAAAG ATTCATCGTAATGGAGATAAATGTTCAGCTCTTATAGGAAGTGTTTGTTTAACTTCTACTGATAAATCTAGTGACCTTGAGCAAGGTGACCTTACGTCTT CTGATTCCAGAGATGGGGATGCATTCCAGAGGTGTGACCAGATTGTGGTTGAAAAAAATCATATTGAGGATCCTACGTCATCAAGCTCCTTAAATCTTGA ACTTTTGATGAAAAAGGTATTTGAAGAATGGCCTAGTCATTTTTGTCATAGTTTCTTGTATTGA
AA sequence Show only first row Show all	>Lus10024777 pacid=23159535 polypeptide=Lus10024777 locus=Lus10024777.g ID=Lus10024777.BGIv1.0 annot-version=v1.0 MMGRGPGRGCGTGEMPCRPSCRVMAFNSQATEPEVPTSMITGTNCPRGVDFFSQARKVLCERSPFDAPEDVSGTSVSASSYLTTLPSGLASLLRNSESRK RRKKSHSSADKKSSRVTERSKGANIWLETEDYFRELALDDIDSLFQLCSSLRSLAAINCLSLPYIPNVENTRSELLFNQENVNYDMSSCLENRNGMIPTR EVKQGRQHVEIDNMGVQISETEPLPPVACGNVSPSEFSGSVCWVLSCRNRNLLTSERPSKKRKLLGSDAGLDKVLIGSPCEGDSSTCDFCCKGNLWNDSD KLIVCCSCNTAVHGKCYGVQGDIHEPWLCTKCKKNTEDKDSVKRPCLLCPKMGGASKPVGNSSDTSEAEFVHLFCSVWMPEVYVEDLTKMEPIMNLSAIK DIHKKLVCKVCKVKCGTCVRCSHGTCRAAFHPRCAREAKHRLEVWGKYGHDSVELRAFCSKHSGLLGVKDSFEVGEHSLTVKCISVAENLAEQIPDKHQK IHRNGDKCSALIGSVCLTSTDKSSDLEQGDLTSSDSRDGDAFQRCDQIVVEKNHIEDPTSSSSLNLELLMKKVFEEWPSHFCHSFLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77800			PHD finger family protein (.1....		Lus10024777 [exp]	0	1
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001859 [exp]	1.0	0.9842
AT1G02080			transcription regulators (.1.2...		Lus10024660 [exp]	1.7	0.9771
AT1G77800			PHD finger family protein (.1....		Lus10009785 [exp]	3.5	0.9617
AT1G02080			transcription regulators (.1.2...		Lus10042877 [exp]	3.7	0.9785
AT5G24740			Protein of unknown function (D...		Lus10003835 [exp]	5.7	0.9751
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10022224 [exp]	6.5	0.9675
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040892 [exp]	6.7	0.9724
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10029218 [exp]	6.7	0.9661
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016882 [exp]	7.7	0.9632
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10002605 [exp]	8.5	0.9683

Compare expression of checked genes

Lus10024777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.