Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77800 464 / 2e-147 PHD finger family protein (.1.2) AT1G05830 71 / 2e-12 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT2G31650 71 / 2e-12 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT3G14740 66 / 2e-11 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G53430 55 / 2e-07 SET29, ATX5, SDG29 SET domain group 29 (.1) AT4G27910 54 / 5e-07 SDG16, ATX4 SET domain protein 16 (.1) AT3G61740 49 / 9e-06 SDG14, ATX3 SET domain protein 14 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009785 [exp] 933 / 0 AT1G77800 388 / 3e-115 PHD finger family protein (.1.2) Lus10009786 [exp] 332 / 1e-109 AT1G77800 155 / 2e-43 PHD finger family protein (.1.2) Lus10024779 [exp] 183 / 1e-54 ND 72 / 7e-16 Lus10026725 [exp] 72 / 1e-12 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 70 / 6e-12 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10024777 [exp] 68 / 1e-11 AT1G77800 385 / 7e-120 PHD finger family protein (.1.2) Lus10038142 [exp] 46 / 6e-05 AT3G14740 315 / 1e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10005007 [exp] 44 / 0.0005 AT4G27910 611 / 0.0 SET domain protein 16 (.1) Lus10012626 [exp] 43 / 0.0008 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G089400 [exp] 697 / 0 AT1G77800 939 / 0.0 PHD finger family protein (.1.2) Potri.005G171800 [exp] 677 / 0 AT1G77800 522 / 2e-160 PHD finger family protein (.1.2) Potri.014G146300 [exp] 70 / 4e-12 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.002G232800 [exp] 67 / 4e-11 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.012G013900 [exp] 55 / 2e-07 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.015G014300 [exp] 54 / 4e-07 AT5G53430 1322 / 0.0 SET domain group 29 (.1) Potri.002G170600 [exp] 53 / 9e-07 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2) Potri.014G098400 [exp] 52 / 1e-06 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.011G103100 [exp] 50 / 3e-06 AT3G14740 339 / 1e-115 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.001G382500 [exp] 47 / 5e-05 AT3G14740 338 / 3e-115 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024778 pacid=23159537 polypeptide=Lus10024778 locus=Lus10024778.g ID=Lus10024778.BGIv1.0 annot-version=v1.0 ATGGGAGATTTCTGTGAGCGTTATTCTTTCAAAAAGGTTCAGTTAAAAGATGTTTCTGTTTCTATCCAGAAGGAAAGTCCTCTATATTCAGATATTGATG CACTTCTCTCTGATCTGATGAAAATGGATACATCTTCAATCAATTTTATTCACCCTTGTATCCGTCAAAAGCTGCTCCAGATGCATAACAGAATGCTTTT CAACAGTGGTTCTCATGAGTGTGAAGGAATTGAGGAGATAGAAATGTCTCGTTTGGAGGCTTCGTCAGGCGCAAGCGTTTGCTGTAATCATGAGAACAAA CATTTAGAGTGCAATAATAGAGTTTATAATCCTGACGGAGACATTTCTGACAAGCAACTCCAGTCCGATGAGCTAGGAATTTTTCCGATGTCTCCAGCTG ATGAAGTAGAAGGAGAAATAATGTATTTTCAACACAAGCTGCTCAGTAATGCAGTTCAAAGAAAGCACTTCACTGGAAATCTTGTTTGCAATCTTTCTGC AAGTTTACCTGCTGAGATTGATGCTGCAAGGAAGAAAAATTGGGAATCTGTGCTGGTTAATCAGTACATTTGTAAACAGAGGGAAGCTAAGAAATTGGGA AGGAAAGAGAAGAGGCACAAGGAAGCTCAAGCTATACTAGTTGCTGCAACTGCTGCTGCTGCCGCCTCATCTAGAACTTCATCCGTAAGAAAAGATGCTT TTGATGAATGCACACTTAATGAGCTTAATGTTTCATTTGGGAGACCGGGTGTTTCATCCCAGTCGATTCCCCGTCCAAAAGAAACCCTATCGAGGGTAGC ACTTCCAAGGATCTCATCACAGAAGTACTCTGATCCTCTTCAGTCAACTCTCGAGATTTCGAAAGAGCATTCTAGATCATGTGATATTTGCAGGCGGTCG GAGGCAGTATTGAGCCCTATCTTTGTCTGTTCCAGTTTTCATCTACACTGTTACCGGAATGTCAAAGAATCTCCAGGTCCATGGCATTGTGAATTATGTG AAGACTTGTTATCGTCCAAGCATTCTGGAGGCGATTCTCTGAACTTCTGGGAAAAGCCTCATTTTGTTGCTGAATGTGGTTTATGTGGTGGTGATACTGG TGCTTTCCGAAAATGCATCAATGGTCAATGGGTCCATGCCTTCTGTGCTGAGTGGTTGTTTCAGTCGATGTTCAGAAGGGGTCAAGTTAGTTCTGTTGAA GGAATGGAAGAGCTTTTAAAAGTGGCTGATGTCTGCTGTATTTGCCATCGTAAGCATGGTGCTTGTTTACGGTGTAGCTACGGGCATTGTCAGACTGCAT TTCATCCTACTTGTGCAAGAACTGCCGGTTTTTATATGAATGCCAAGTTTCTCAGTGGCAAGTTTCAGCACAAGGCTTACTGTGAGAAACATAGTGTGGA GCCGAAGTTGAAGGCTGAATCACAGAAACATAGCATTGACGAGTTGAAGAGCATCAAACAAATCAGGGTAGAATTGGAGAGGTTGCGTCTTCTGTGTGAA AGAGTCATCAAACGTGAAAAGCTAAAGCGGGATTTGGTTATCTGCTCCCATAACATACTTGCGAGCAAATGGGACCATTGGATTCATTCTGTAGTTCAAA CCTCATTATTACATCCTGATGTTAGTTCGGAGTCGGCTACCACAGCCATCAAAGCCGATGCAGATGGTTGTAGATCAGGCAGTGATGCTATCCAGAGATC AGATGAAATCACAGTAGATGGTGATGTCCCTGTGCCGAAGCGGATCAAGGTTGCAGTGTCAACGGATACCACTGAGGAAAAGACAGATGACAGTTCCACG TCTGAAAATCCTTTGAATAGTAGACCAGCAGAGAGGCAGCCGTATGCTGGGAAGCAAATTCCTAGAAGATCTGGCCCATCTGGTCGTAGTATGTTGGATG ATGAAGACTTTAATTCTAGATCAAGGAAGCGAATGGAAACACTGCAGAAGGAGTTGGTAATGACTTCGGATCAAGCATCCATGAGGAATCAGCAGTTACC CAAAGGATACTTTTACATACCGGTAGATCGTCTTCCAAAAGAGAAGCAAACTGATCCTGGAGAAGCATTGGAAACTGATGGACATGTTTCATCCAAAGGA AATTAA
AA sequence Show only first row Show all	>Lus10024778 pacid=23159537 polypeptide=Lus10024778 locus=Lus10024778.g ID=Lus10024778.BGIv1.0 annot-version=v1.0 MGDFCERYSFKKVQLKDVSVSIQKESPLYSDIDALLSDLMKMDTSSINFIHPCIRQKLLQMHNRMLFNSGSHECEGIEEIEMSRLEASSGASVCCNHENK HLECNNRVYNPDGDISDKQLQSDELGIFPMSPADEVEGEIMYFQHKLLSNAVQRKHFTGNLVCNLSASLPAEIDAARKKNWESVLVNQYICKQREAKKLG RKEKRHKEAQAILVAATAAAAASSRTSSVRKDAFDECTLNELNVSFGRPGVSSQSIPRPKETLSRVALPRISSQKYSDPLQSTLEISKEHSRSCDICRRS EAVLSPIFVCSSFHLHCYRNVKESPGPWHCELCEDLLSSKHSGGDSLNFWEKPHFVAECGLCGGDTGAFRKCINGQWVHAFCAEWLFQSMFRRGQVSSVE GMEELLKVADVCCICHRKHGACLRCSYGHCQTAFHPTCARTAGFYMNAKFLSGKFQHKAYCEKHSVEPKLKAESQKHSIDELKSIKQIRVELERLRLLCE RVIKREKLKRDLVICSHNILASKWDHWIHSVVQTSLLHPDVSSESATTAIKADADGCRSGSDAIQRSDEITVDGDVPVPKRIKVAVSTDTTEEKTDDSST SENPLNSRPAERQPYAGKQIPRRSGPSGRSMLDDEDFNSRSRKRMETLQKELVMTSDQASMRNQQLPKGYFYIPVDRLPKEKQTDPGEALETDGHVSSKG N

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77800			PHD finger family protein (.1....		Lus10024778 [exp]	0	1
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10035985 [exp]	2.8	0.8092
AT1G04790			RING/U-box superfamily protein...		Lus10023671 [exp]	2.8	0.8037
AT3G20730			Tetratricopeptide repeat (TPR)...		Lus10027534 [exp]	4.9	0.8038
AT2G41020			WW domain-containing protein (...		Lus10027285 [exp]	5.3	0.7765
AT2G39580			unknown protein		Lus10029459 [exp]	5.7	0.7790
AT5G19210			P-loop containing nucleoside t...		Lus10010514 [exp]	6.5	0.7982
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001860 [exp]	6.9	0.7904
AT5G65380			MATE efflux family protein (.1...		Lus10020951 [exp]	7.0	0.7273
AT1G76630			Tetratricopeptide repeat (TPR)...		Lus10025170 [exp]	7.7	0.8004
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Lus10023549 [exp]	8.5	0.7784

Compare expression of checked genes

Lus10024778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.