Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02150 580 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 252 / 7e-77 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G60770 241 / 2e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 233 / 4e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G01990 227 / 6e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27460 219 / 8e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21705 218 / 1e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 210 / 3e-61 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09450 177 / 7e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 155 / 2e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009787 [exp] 988 / 0 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 266 / 1e-82 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021053 [exp] 252 / 3e-77 AT1G02370 494 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042574 [exp] 244 / 8e-74 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033698 [exp] 231 / 5e-69 AT2G20710 349 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003590 [exp] 228 / 4e-68 AT4G21705 434 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004173 [exp] 217 / 8e-65 AT1G02370 419 / 1e-143 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005855 [exp] 217 / 5e-64 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001213 [exp] 216 / 2e-63 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G139400 [exp] 638 / 0 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G050300 [exp] 630 / 0 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G208900 [exp] 264 / 1e-81 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G079600 [exp] 261 / 4e-81 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G063300 [exp] 258 / 8e-80 AT2G20710 345 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G157400 [exp] 258 / 8e-80 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G120900 [exp] 245 / 1e-74 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G063400 [exp] 245 / 1e-74 AT2G20710 349 / 3e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132500 [exp] 240 / 3e-73 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.011G051500 [exp] 232 / 8e-70 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10024781 pacid=23159572 polypeptide=Lus10024781 locus=Lus10024781.g ID=Lus10024781.BGIv1.0 annot-version=v1.0 ATGCTTCTACAGCCATCTCTGCATCACTCGAAGCTTTCGGTCTCATCTAGTCTTGGTTACTCCACCAGCTCCCTCCCATGGAGAACTCCCAACTATACCC CTCGCAGCCGGGCTCTTGAGTTTCAAACATTCACAATCACTTGTTCCATCTCTCACGTTCACAGCTATGGAACTGTTGATTTCGAAAAGAGACCTCTCCT AAACTGGAGTGGGGTGTACAAGCGGATTTCGAGAATGGAGAACCCTGATTTGGGTGCTGGCACCGTGTTGGTTCAGTGCGAGAAAGAAGGAAAGAAGCTC AGTAAGTGGGAGCTCTGCAGGGTCGTCAAGGAATTAAGGAAGTTCAAACGCTTCAAGCAGGCTATTGAGGTTTATGAATGGATGGTTAACGAAGGAGAGA GATATGCTATATCTGCTAGTGATGCTGCCATTCAACTGGATCTTGTAGCCAAAGTGCATGGCATTTCTGCTGCTGAAGAATATTTCCTCAAGGTTCCAGA TTTTCTCAAGGATAGAAGGATCTATGGTGCTCTGCTCAATTCTTACGCGAAGCATAAAAATAAAGAAAAGGCAGAATCACTGTTTGCCGAAATGCGAGGC TACAATTATGCAACGCATACACTTCCGTTCAATGTAATGATGACCCTGTACATGAATCTCAAGGAGTACGCCATGGTGGACAAATTGATTTTCGAAATGT CGAAGAAGAGCATCCAACTTGATTTATACTCTTACAACATATGGTTGTCATCTCGTGGGTGTGAGGGTAATATAGAGAAGATGGAGCAGGCGTTTGAGCA AATGAAAGTTGACAAGAATGTTACTGCTAACTGGACAACATATAGCACTTTGGCAACACTTTACATTAAGATGGGACTGAATGACAAGGCTGAAGATTGC TTGAAGATAGTTGAGAAAAGAATCACAGGTCGTGATAGGATGCCTTACCACTATCTCTTGAGTTTGTATGGTAATGTTGGTAACAAAGAAGAACTTGTCC GGGTGTGGGAAACTTACAAATCCAATTTTGTCGTAGTCCCTAATCTTGGCTACCATGCTTTCATCTCATCTCTTATCCGTTTGGGCGACATTGAAACCGC AGTGAATCTTTATGATGAGTGGATGCAAATTAAGACCTCGTACGACCCAAGAATTGCAAATCTGCTAATGGGATGGTTTGCTAGGGAGGGAGACTTTGAC AGATTAGAGAGATTGTTTAATGATATTATGGACGCAGGAGCTAAGCCAAATTCCAGTACTTGGGAAATTCTGGCAGAGGGCCATGTGGGAGAGGAGAGAA TTCTAGAGGCTTTGTCTTGCTTGAAGAAAGCTGTTCTTGGAATGGATTCAGTGAAGAGATGGAAGCCAAGAGCTGAAGTTGTTTCTTCCTTCTTGAAGCT GTGCGAGGAAGAGGGGGACCTTGGAAGCAAGGAGGTATTGGAGAGTTTGTTTAGAGAATCAGGATTCCTTGCAGACAAAGAATATGCGTCTCTTATTGGT TTGTCCTACATTAATGATCAAGACGCAGACAGCAGCAGCGGGAATGGGAATTTGGATGATGATGAGTCAGAGGTGCTTCTAAACCAATTGAATGCTGGTG TTTGA
AA sequence Show only first row Show all	>Lus10024781 pacid=23159572 polypeptide=Lus10024781 locus=Lus10024781.g ID=Lus10024781.BGIv1.0 annot-version=v1.0 MLLQPSLHHSKLSVSSSLGYSTSSLPWRTPNYTPRSRALEFQTFTITCSISHVHSYGTVDFEKRPLLNWSGVYKRISRMENPDLGAGTVLVQCEKEGKKL SKWELCRVVKELRKFKRFKQAIEVYEWMVNEGERYAISASDAAIQLDLVAKVHGISAAEEYFLKVPDFLKDRRIYGALLNSYAKHKNKEKAESLFAEMRG YNYATHTLPFNVMMTLYMNLKEYAMVDKLIFEMSKKSIQLDLYSYNIWLSSRGCEGNIEKMEQAFEQMKVDKNVTANWTTYSTLATLYIKMGLNDKAEDC LKIVEKRITGRDRMPYHYLLSLYGNVGNKEELVRVWETYKSNFVVVPNLGYHAFISSLIRLGDIETAVNLYDEWMQIKTSYDPRIANLLMGWFAREGDFD RLERLFNDIMDAGAKPNSSTWEILAEGHVGEERILEALSCLKKAVLGMDSVKRWKPRAEVVSSFLKLCEEEGDLGSKEVLESLFRESGFLADKEYASLIG LSYINDQDADSSSGNGNLDDDESEVLLNQLNAGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10024781 [exp]	0	1
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10009787 [exp]	1.0	0.9819
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10014534 [exp]	1.4	0.9644
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Lus10001187 [exp]	2.8	0.9520
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10005013 [exp]	3.5	0.9532
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10014660 [exp]	4.6	0.9529
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10005668 [exp]	4.9	0.9546
AT4G29060		EMB2726	embryo defective 2726, elongat...		Lus10043229 [exp]	5.0	0.9533
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10000483 [exp]	5.2	0.9571
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Lus10036651 [exp]	5.7	0.9437
AT5G04590		SIR	sulfite reductase (.1)		Lus10027360 [exp]	6.3	0.9494

Compare expression of checked genes

Lus10024781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.