Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49100 76 / 9e-15 unknown protein AT3G06868 60 / 1e-09 unknown protein AT3G06870 44 / 5e-05 proline-rich family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001474 [exp] 295 / 2e-97 AT3G06868 194 / 1e-58 unknown protein Lus10006504 [exp] 74 / 3e-14 AT5G49100 221 / 5e-68 unknown protein Lus10037496 [exp] 70 / 1e-12 AT5G49100 216 / 6e-66 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G012000 [exp] 110 / 9e-27 AT5G49100 140 / 1e-37 unknown protein Potri.008G220700 [exp] 108 / 7e-26 AT3G06868 155 / 1e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024784 pacid=23159574 polypeptide=Lus10024784 locus=Lus10024784.g ID=Lus10024784.BGIv1.0 annot-version=v1.0 ATGGAGTTAGGTCCTCCGGAGACGGAGGGCGGAGGAAAAGAAGATGAAATGGAAGATGGAATGCAATGCAGCTACCATCCATTCAGAAACAGAAACAACC CAGGTGGGATCTGTGCCTTTTGCCTCCAGGAAAAGTTAGGCAAGCTGCTTGTTTCCTCCTCCTTATTCCCTGTTGTTGTTGGTCCCTCAACTTCTTCCTC CACTTCCTCCCCTACTACCACTTCCTCCCCTACTACCACTTCCTTCACATCTCAAGTCCTCCCCCTTCCATCATCCGCTGCTGCTGCTGCTACTTCCACA CGAAGTCACAGACCAAATGACAATCCTAATCATAATCATAGTTATAGCAACTACTGCAGCTCCCTTGGCAAGCCCAGAATCCCATTTCTCATGGCCAATA AGAAGAAAAAGAAAAACGAAATCAGATTCAGGGCTACGTCTTCTGAAAGCCGCAATGATGTCGTTTTCAAGCGGAGCAAGTCCACAGCAGCTCCTCCTGC ACCCACCCATTTCTTCGAGAAGGATCAATTCAGCCCCAGGAAGCGTGGTGGTGGTGGTGGTGGCTTCTGGTCATTTCTGTACCACTCTACTTCTTCCAAT TCAAAATCATCGTCTAACAAGAAAAAAAATGATCAAGAAATGGTTGTTGTTGTGGAAGAAGAAGAAGACCACAGCAGCAGCAGGCTGGGTAATAGCCAAG CAACCGCCTCTGCATCCTCATTTCAGAGGAGGGTTTCGAGATCTAGATCTGTGGGATGTGGGAGCAGGAGCATTTCAGGTGATTTCTTCGAGAGAATATC TAGTGTTGGATTTGGGGATTGCAAACTGAGGAGAGTTGAGTCCCAGAGAGAAGGCAAGCCTACTTCTTTTGTGGAAAGGGTTAAAAAGTGCGGTGGAATC TTTGGTGGTTTCATCATCTCCCCATCTTCTTCTTCATCCTCATCATCCTCATACTGGGTTTCCGATGTCACTGGGAAATCAACGGGCAATAATAATAATA ATAATAATGGAAGGGCAAATAAGAGCTGGAGTTGGGGTTTTGCCAGTCCCATCAGAGCTTTCAGTTTCAGCAGCAGCAAAACTTGTGGTGGTAAGAGGGA TCATCATGCCATCAGGGAAACTGGGAATACCAACTCTGCTCCTAACTTGTCTGCCATTCCTTCCTTGTTAACTGTCAGAAGCTGA
AA sequence Show only first row Show all	>Lus10024784 pacid=23159574 polypeptide=Lus10024784 locus=Lus10024784.g ID=Lus10024784.BGIv1.0 annot-version=v1.0 MELGPPETEGGGKEDEMEDGMQCSYHPFRNRNNPGGICAFCLQEKLGKLLVSSSLFPVVVGPSTSSSTSSPTTTSSPTTTSFTSQVLPLPSSAAAAATST RSHRPNDNPNHNHSYSNYCSSLGKPRIPFLMANKKKKKNEIRFRATSSESRNDVVFKRSKSTAAPPAPTHFFEKDQFSPRKRGGGGGGFWSFLYHSTSSN SKSSSNKKKNDQEMVVVVEEEEDHSSSRLGNSQATASASSFQRRVSRSRSVGCGSRSISGDFFERISSVGFGDCKLRRVESQREGKPTSFVERVKKCGGI FGGFIISPSSSSSSSSSYWVSDVTGKSTGNNNNNNNGRANKSWSWGFASPIRAFSFSSSKTCGGKRDHHAIRETGNTNSAPNLSAIPSLLTVRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06868			unknown protein		Lus10024784 [exp]	0	1
AT4G36180			Leucine-rich receptor-like pro...		Lus10042177 [exp]	1.0	0.9654
AT2G37960			unknown protein		Lus10021116 [exp]	4.2	0.9578
AT5G19340			unknown protein		Lus10041215 [exp]	4.5	0.9492
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Lus10041617 [exp]	7.1	0.9530
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10000986 [exp]	7.4	0.9459
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10031539 [exp]	9.5	0.9346
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10003750 [exp]	12.5	0.9384
AT4G35930			F-box family protein (.1)		Lus10041876 [exp]	12.6	0.9390
AT1G57800		ORTH3, VIM5	VARIANT IN METHYLATION 5, ORTH...		Lus10038731 [exp]	13.3	0.9353
AT3G07610		IBM1	increase in bonsai methylation...		Lus10027890 [exp]	14.1	0.9419

Compare expression of checked genes

Lus10024784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.