Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15900 452 / 2e-155 PRL1 pleiotropic regulatory locus 1 (.1) AT3G16650 439 / 3e-150 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15890 100 / 5e-22 binding (.1) AT2G21390 67 / 2e-11 Coatomer, alpha subunit (.1) AT1G62020 64 / 1e-10 Coatomer, alpha subunit (.1) AT2G41500 64 / 2e-10 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT4G02730 62 / 3e-10 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G13480 62 / 5e-10 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G50230 61 / 1e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 59 / 3e-09 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006511 [exp] 507 / 4e-177 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10037500 [exp] 507 / 5e-177 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10001473 [exp] 199 / 2e-59 AT3G16650 219 / 2e-67 Transducin/WD40 repeat-like superfamily protein (.1) Lus10001471 [exp] 160 / 1e-41 AT4G15890 1465 / 0.0 binding (.1) Lus10024786 [exp] 121 / 4e-32 ND 62 / 1e-11 Lus10004167 [exp] 72 / 6e-13 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 70 / 2e-12 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10039597 [exp] 66 / 3e-11 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10017570 [exp] 65 / 3e-11 AT1G18080 561 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G012800 [exp] 483 / 7e-168 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.010G013300 [exp] 130 / 1e-31 AT4G15890 1378 / 0.0 binding (.1) Potri.002G051900 [exp] 68 / 3e-12 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 66 / 3e-11 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.009G058000 [exp] 64 / 1e-10 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.011G045500 [exp] 64 / 2e-10 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G026800 [exp] 63 / 4e-10 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G197900 [exp] 61 / 1e-09 AT5G13480 760 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.T125206 [exp] 61 / 1e-09 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G087200 [exp] 59 / 5e-09 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10024785 pacid=23159534 polypeptide=Lus10024785 locus=Lus10024785.g ID=Lus10024785.BGIv1.0 annot-version=v1.0 ATGAAAGCAGCACCACATACGATAGGATCCTTGGTTCTTGTTTGCCCATCAGCTGATATGAACAATGTCATTCCTCTACTATACACAATCATAACTTCTG GAAATTCTGACCCCAAGTTGAGAAAACTACCTGGTCCTCTTGTCCCTGTGAAAGAGACAGCTCCCTCTTCGTACATTCAGGCGTGGTTGACAATGGGGAA GATTTGCTTAGCGGATGGGAACCTTGCAAAGAACTACATCCCTTCATTTGTGCAGCCCCCTGGTAGTCACCATCTCACAGAGGGACTTCCCCTGACCTAC CGAGCATCAGCTCCGCTCTTTCAGCACCTTTATGTTCAGATCCTGAAGATCCATTATGTGCCCGATCTTTGTCGTTCAGATCCTGAAGATCCACAAAAGG GTGTGGCTAAAAATTCCCTTGTTGTTGGTCCATCTTTGCAGCCTAGGGGAAAGAATGAGGGTGGCATTCCAATCAGAAGCACGGCCGTGATTCCTGCACC CGGTACTGAAAGGAACTTTTCAACTTCTGCAATAATGGAGAGGATGCCGAGCAGATGGCCACGTCCAGTTTGGCATCGTCCTTGGAAGAATTACAGGGTT ATTACTGGCCACTTGGGGTGGGTGAGATCCATTGCATTCGACCCCAGTAATATATGGTTCTGCACTGGTTCAGCTGATCGTACCATAAAGATATGGGACG TGGCTAGTGGGCGATTGAACTACACACTGACAGGACACATTGAACAAGTTCGAGGTCTTGCTGTAAGCCTAAGAGAAACCTATATCTTCTCTGCTGGTGA TGACAAACTGGTTAAATGCTGGGACCTGGAACACAATAAGGTGATCATGCTATTAGGTCTTATCATGGTCATCTTAGTGGTGTCTACTGCCTGGCTCTTC ATCCGACAATTGAGCAAAATCTTTAGCTCACTGGTGGCCGTGATTCAGTTTGCCGGATTCGTGTTGAAACTGATATATATGCGGTATTGTCAGGTATGGG ATATCCGAACCAAGATGCAGGCCTTTGCTCTATCTGGTCATGATAATACAGTGTGCTCCGTTTTCGCACATCCAACGGATCCTCAAGTTGTAACAGGTTC TCATGACTCGACAATTAAGTCCTGGGATCTTAGATATGGTAAAAACCATGTTAACTCTGACACACCCACAAAAAGTCTGTTAGAGCCTTGGCACGACATC CTACAGAGTATGCGGCATAGTTTTGCTTTTCCATCAGCTGAGAACATCAAGAAAAAACATGCTGTCTCAACAAAAGACCATTATCAATTCAATGGAGTAA TGGTGACAGGAGGAGATAACGAAAGCTTGTGGTTCTGGGATTGGAAGAGCGGTAATAATTTTCAGCAACCTCAAACAATAGTACAGCCAGGGTCCTTGGA AAGCGAAGCTGGCATTTTGGCTTCATCGTTTGACATAACAGGTTCAAGTCTCGTAACATGTGAAGTCGACAAGACGATCAAGTTGTGGAAGGAAGATGAA AACGCCACCCCAGAAACTCACCCTCTCAACTTCAAGCCATCTAAGGATATTATACAGTTCTAG
AA sequence Show only first row Show all	>Lus10024785 pacid=23159534 polypeptide=Lus10024785 locus=Lus10024785.g ID=Lus10024785.BGIv1.0 annot-version=v1.0 MKAAPHTIGSLVLVCPSADMNNVIPLLYTIITSGNSDPKLRKLPGPLVPVKETAPSSYIQAWLTMGKICLADGNLAKNYIPSFVQPPGSHHLTEGLPLTY RASAPLFQHLYVQILKIHYVPDLCRSDPEDPQKGVAKNSLVVGPSLQPRGKNEGGIPIRSTAVIPAPGTERNFSTSAIMERMPSRWPRPVWHRPWKNYRV ITGHLGWVRSIAFDPSNIWFCTGSADRTIKIWDVASGRLNYTLTGHIEQVRGLAVSLRETYIFSAGDDKLVKCWDLEHNKVIMLLGLIMVILVVSTAWLF IRQLSKIFSSLVAVIQFAGFVLKLIYMRYCQVWDIRTKMQAFALSGHDNTVCSVFAHPTDPQVVTGSHDSTIKSWDLRYGKNHVNSDTPTKSLLEPWHDI LQSMRHSFAFPSAENIKKKHAVSTKDHYQFNGVMVTGGDNESLWFWDWKSGNNFQQPQTIVQPGSLESEAGILASSFDITGSSLVTCEVDKTIKLWKEDE NATPETHPLNFKPSKDIIQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10024785 [exp]	0	1
AT4G12140			RING/U-box superfamily protein...		Lus10007628 [exp]	3.3	0.7730
AT5G39030			Protein kinase superfamily pro...		Lus10027116 [exp]	9.4	0.7644
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10028979 [exp]	11.5	0.7536
					Lus10008155 [exp]	21.5	0.7497
					Lus10024153 [exp]	34.1	0.7370
					Lus10033284 [exp]	38.3	0.7399
AT5G38260			Protein kinase superfamily pro...		Lus10027119 [exp]	45.2	0.7173
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10029702 [exp]	47.7	0.7334
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10017952 [exp]	52.9	0.7204
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10028116 [exp]	60.7	0.7004

Compare expression of checked genes

Lus10024785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.