Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43120 504 / 2e-173 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) AT5G10200 441 / 2e-148 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) AT3G50030 368 / 1e-121 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) AT5G65160 47 / 3e-05 TPR14 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) AT4G30480 45 / 6e-05 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G58620 46 / 8e-05 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT3G17970 43 / 0.0005 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018706 [exp] 926 / 0 AT5G43120 534 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Lus10029573 [exp] 429 / 1e-142 AT5G10200 1056 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Lus10006301 [exp] 425 / 1e-141 AT5G10200 1059 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Lus10035117 [exp] 45 / 7e-05 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 45 / 0.0002 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10042854 [exp] 45 / 0.0002 AT1G53300 749 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10028154 [exp] 44 / 0.0003 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10022603 [exp] 44 / 0.0004 AT3G54010 831 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G120800 [exp] 582 / 0 AT5G43120 635 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Potri.007G052300 [exp] 513 / 2e-176 AT5G43120 580 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Potri.005G076300 [exp] 436 / 2e-146 AT5G10200 1113 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Potri.007G092100 [exp] 436 / 3e-146 AT5G10200 1085 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Potri.018G100700 [exp] 49 / 6e-06 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.006G178900 [exp] 48 / 8e-06 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.005G166300 [exp] 47 / 5e-05 AT5G65160 436 / 5e-145 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.015G038600 [exp] 46 / 8e-05 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.012G046900 [exp] 46 / 8e-05 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.011G111500 [exp] 45 / 0.0001 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024789 pacid=23178843 polypeptide=Lus10024789 locus=Lus10024789.g ID=Lus10024789.BGIv1.0 annot-version=v1.0 ATGACACTGAGCGACAGCCACCACAATGTCCGTATCTTGAATGGTCTGTGGAGCATCGCCATGAACCAGCCGGATGATTCAGAGTTGCCATCACTAGGCA TCTTCAGCTGCATGGCCACTCTGATTCACCAGAGTGTTCATAAACACACCAGTAGAGATCATCATTGGCTTCTAAATCATGACCAGAGCATGTGCATCCC TTACTATGCAGCTCATGTCATTGGTTCTTACACCATGAACAAGGTCGAGTCCGCGCAGTTGGCTGTCGAATCGGGTGTGGTCCCTCCACTCATGGAGCTC TTCAGAGGCAAGATCAGCTGGGTTGAACAAAGAGTAGCCGTTAGAGCACTTGGACATCTCGCCAGCTATGATCATACGTTCGAAGCTGTCGCTGTTTTCG AAGAAGAGGTGGTTAAGTTAGCCATGGATTTGGCTTCCACTGGAATTCATTTGGTGTACCGTGACTTCGTCGGAGTGAAGGACAAGACCAAGAGATTGAA ATATCACTGTGATCTGCTGACAAGATCGAAAGCTGAGGAATGGGCCAGCCAACTCCAGTGTTGGTCGATTCATCTATTGAGTTGCTTCGCTTCGAAAGGG CGGTATGTAACTATTAGCCTCATCTGCAGCCAGGTTGGTTTTCTAGAGAGTTTAAGTAGTATGTGGGGTGGAGTAGTAAATCACTCATCTCCAGCTGGTA TAGGACTGATTAGAATCTTATGTTACCACAGAGTTGGTAGGAAAAAGATTTCTGAATCCAAACAAGTCATACAAAACATCTGCAATATCTCGAGATCGTC TGATGATTGGCAGTACATGGGGATTGACTGTCTTCTGTTACTTCTCAAAGACCAAGAAACCAGGTACAGAGTTCTGGAATTGGCCTCTTCCATTCTTGTC GATTTGGTCGAACTTAAAAACATTGGTGAACATAGATCAAACGTGGGGGGAACAATCACAGAAACTCTCCTTCTAGACTACAAGCTACGGAAAGTGAAGC TAAAGGGTAACAATGTGAATATCAGAGTTCTTCAGGATCTGCAACAAGTATGGAGCTTGAAGGTGGAGAGGAGGAGAAAGGAGAGCGCAATGTCGGAAGA GAGAGCGGAGGAGAGAAAGGTATTGGCTATGTTGATAAAGCAACAAGGGAACCACATGTTTCGGGCTGGAGAGATCGAGGAAGCGTTTGCGAAATATAGT GAAGCACTTGAGATTTGTCCATTAAGGTTTAGAAAAGAGAGGATGGTTGTGTACAGCAACAGGGCTCAGTGTAGTTTGGTTGTTGGCGATTGGGACGGGG CGATCAGTGACTCGACTCGTGCCCTTTCGTTGTCGAATCGGGGTAAATCGCATGGGAAGAGCCTGTGGAGAAGGTCGCAAGGGTATGACATGAAAGGGAT GGCCAAGGAGAGCTTGATGGACTGCTTAATGTTCATTAACAATTGTATCACTGAAAAAGGCAGAGTTCCGTATAATGCGGTGCGTTTGATGAGCAAGCAG ATGGATGCCACGTGGCTGTTTGCTGATGCTGCTGCGAATAGTGCAAAAGCTGAACTGGAAAAGGATGATGAGATTGGTGATGGAAAGGAGGAAGAGTACA GCAGCAGCAGCAGCAGCAAGGATAAGAAAGATTTGGAAGGATTGATTATGAGAATGGTGATGGCAAGAAAGGGTATTGATGACATTTCAGGTAGTTCAGA CTGTGTTTTTTCTTATGCATGA
AA sequence Show only first row Show all	>Lus10024789 pacid=23178843 polypeptide=Lus10024789 locus=Lus10024789.g ID=Lus10024789.BGIv1.0 annot-version=v1.0 MTLSDSHHNVRILNGLWSIAMNQPDDSELPSLGIFSCMATLIHQSVHKHTSRDHHWLLNHDQSMCIPYYAAHVIGSYTMNKVESAQLAVESGVVPPLMEL FRGKISWVEQRVAVRALGHLASYDHTFEAVAVFEEEVVKLAMDLASTGIHLVYRDFVGVKDKTKRLKYHCDLLTRSKAEEWASQLQCWSIHLLSCFASKG RYVTISLICSQVGFLESLSSMWGGVVNHSSPAGIGLIRILCYHRVGRKKISESKQVIQNICNISRSSDDWQYMGIDCLLLLLKDQETRYRVLELASSILV DLVELKNIGEHRSNVGGTITETLLLDYKLRKVKLKGNNVNIRVLQDLQQVWSLKVERRRKESAMSEERAEERKVLAMLIKQQGNHMFRAGEIEEAFAKYS EALEICPLRFRKERMVVYSNRAQCSLVVGDWDGAISDSTRALSLSNRGKSHGKSLWRRSQGYDMKGMAKESLMDCLMFINNCITEKGRVPYNAVRLMSKQ MDATWLFADAAANSAKAELEKDDEIGDGKEEEYSSSSSSKDKKDLEGLIMRMVMARKGIDDISGSSDCVFSYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43120			ARM-repeat/Tetratricopeptide r...		Lus10024789 [exp]	0	1
AT2G13820		AtXYP2	xylogen protein 2, Bifunctiona...		Lus10031115 [exp]	6.2	0.9527
					Lus10016534 [exp]	13.2	0.9363
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10005537 [exp]	22.8	0.9349
					Lus10026293 [exp]	26.3	0.9342
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10043077 [exp]	27.3	0.8653
AT1G65870			Disease resistance-responsive ...		Lus10016231 [exp]	29.5	0.9328
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10043211 [exp]	32.4	0.9300
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10013960 [exp]	35.3	0.9277
AT3G05600			alpha/beta-Hydrolases superfam...		Lus10029878 [exp]	38.1	0.9271
					Lus10041871 [exp]	38.3	0.9271

Compare expression of checked genes

Lus10024789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.