Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19540 577 / 0 Protein of unknown function (DUF620) (.1) AT1G49840 544 / 0 Protein of unknown function (DUF620) (.1) AT1G27690 513 / 0 Protein of unknown function (DUF620) (.1) AT1G79420 350 / 3e-117 Protein of unknown function (DUF620) (.1) AT5G05840 346 / 3e-115 Protein of unknown function (DUF620) (.1) AT5G06610 307 / 3e-101 Protein of unknown function (DUF620) (.1) AT5G66740 284 / 5e-92 Protein of unknown function (DUF620) (.1) AT3G55720 278 / 1e-88 Protein of unknown function (DUF620) (.1) AT1G75160 268 / 1e-85 Protein of unknown function (DUF620) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018707 [exp] 775 / 0 AT3G19540 566 / 0.0 Protein of unknown function (DUF620) (.1) Lus10013891 [exp] 602 / 0 AT3G19540 674 / 0.0 Protein of unknown function (DUF620) (.1) Lus10026605 [exp] 395 / 2e-137 AT3G19540 405 / 2e-141 Protein of unknown function (DUF620) (.1) Lus10004669 [exp] 343 / 4e-114 AT5G05840 558 / 0.0 Protein of unknown function (DUF620) (.1) Lus10040241 [exp] 339 / 2e-112 AT5G05840 551 / 0.0 Protein of unknown function (DUF620) (.1) Lus10001843 [exp] 320 / 8e-105 AT1G79420 452 / 2e-157 Protein of unknown function (DUF620) (.1) Lus10001755 [exp] 320 / 9e-105 AT1G79420 460 / 2e-160 Protein of unknown function (DUF620) (.1) Lus10015972 [exp] 300 / 8e-98 AT5G06610 426 / 6e-149 Protein of unknown function (DUF620) (.1) Lus10013534 [exp] 295 / 3e-96 AT5G06610 400 / 7e-139 Protein of unknown function (DUF620) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G019900 [exp] 721 / 0 AT3G19540 583 / 0.0 Protein of unknown function (DUF620) (.1) Potri.001G297500 [exp] 621 / 0 AT3G19540 665 / 0.0 Protein of unknown function (DUF620) (.1) Potri.009G092400 [exp] 580 / 0 AT3G19540 644 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G174200 [exp] 374 / 4e-127 AT1G79420 524 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G081700 [exp] 374 / 6e-127 AT1G79420 522 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G062500 [exp] 362 / 6e-122 AT5G05840 614 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G195200 [exp] 360 / 4e-121 AT5G05840 600 / 0.0 Protein of unknown function (DUF620) (.1) Potri.006G196800 [exp] 328 / 1e-109 AT5G06610 457 / 8e-162 Protein of unknown function (DUF620) (.1) Potri.016G062400 [exp] 319 / 5e-106 AT5G06610 474 / 1e-168 Protein of unknown function (DUF620) (.1) Potri.002G262400 [exp] 298 / 2e-97 AT1G75160 541 / 0.0 Protein of unknown function (DUF620) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04788 [flax] [poplar] DUF620 Protein of unknown function (DUF620)
Representative CDS sequence Show only first row Show all	>Lus10024790 pacid=23178937 polypeptide=Lus10024790 locus=Lus10024790.g ID=Lus10024790.BGIv1.0 annot-version=v1.0 ATGGACCGAAAGCAAGGTTTCTTCTCGGCGTTGAAAGGGGAACTCGTCAGAGGACTTTCGCCGAGCAGGTCGCGTGCAAAGAGCCCGGCGAGGAGCGCGT CGCCAATGTCGAGTTTGTTACGGCGGAGGAAGGGACACAACAGCCACCGCTTCTCCCATCCGGAGCCACTTATCGTCGCTAGATCGGGGAGTCTGAGACC TGCGGAGGCGCTTTCTCCGTTGAAGGAAGGTCCGGATCAAGACGACGTTGGAGATTCCAGCAGGATGGAAGGGCGGTGGGGACACTGGATGAAAGGCCCG CTGGGTAGAGCTCCGTCCACCTCTTCAACGGACAACGGTTGCAAGAGGTCCGATCTGAGGCTTCTGCTCGGAGTGCTGGGTGCGCCATTAGCTCCCGTCC ATGTCAGCAGTTCGGAGCCATTGCCTCACCTAAGCATAAAAGATACTCCAATCGAAACCTCGTCTGCTCAATATATATTGCAGCAGTATACCGCTGCCTC AGGGGGACATCGGCTTCAAGGTTCCATCCACAATGCATATGCGATGGGAAAAGTGAAGATGATTGCTTCGGAATTCGAGACAGCCAACAAAGTGATAAAG AATAGGGGTTCTTCCAAAACTGCAGAATCTGGTGGATTTGTGCTGTGGCAGATGAACCCTGACAAGTGGTATGTGGAACTAGCACTGGGAGGAAGTAAGG TTCATGCTGGTTGCAATGGTAAACTTGTATGGAGGCACACACCCTGGCTTGGTCCACATGCTGCCAAAGGCCCTGTTAGACCCTTACGTCGTGCACTTCA GGGTCTTGACCCGAAAACGACTGCAAGTATGTTCATTAATGCAATGTGCATCGGTGAGAAGAAGATCAATGAAGATGACTGTTTTATCCTTAAGATATGT GCAGATCCTGCAACTCTCAAGGCTAGAAGTGAAGGACCCGCTGAGATAATAAGGCATGTCCTGTTTGGTTACTTCAGCCAGAAAACAGGTCTCCTTGTTC ACTTGGAAGATTCCCACTTGACCCGAATCCAGAACAATGGCGGTGATGCTGTTTACTGGGAGACTACGATCAACTCTTTCCTAGATGATTACAGACTCGT GGATGGAGTTATGATCGCTCATTCAGGTCGTTCAGTGGTGACCCTCTTCAGATTCGGAGACACAGCAATGAGTCACACCAGGACCAGAATGGAAGAAGCG TGGGCTATCGAGGAAGTGGCATTTAACGTCCCTGGACTATCAATGGATTGCTTTATCCCGCCAGCCGAGTTGAGATTTGCCTCTGTTAGTGAAACATGTG AGCTACCACAGACTCAAAATCAATGGGTAGGAGCGAAACCTGATGTGACTCCTGCAACCTACCAAACAAGAGTAGCTCCATTAAAGCGAGAGAACGTCAG GTGGACAAGGGAGAACTAG
AA sequence Show only first row Show all	>Lus10024790 pacid=23178937 polypeptide=Lus10024790 locus=Lus10024790.g ID=Lus10024790.BGIv1.0 annot-version=v1.0 MDRKQGFFSALKGELVRGLSPSRSRAKSPARSASPMSSLLRRRKGHNSHRFSHPEPLIVARSGSLRPAEALSPLKEGPDQDDVGDSSRMEGRWGHWMKGP LGRAPSTSSTDNGCKRSDLRLLLGVLGAPLAPVHVSSSEPLPHLSIKDTPIETSSAQYILQQYTAASGGHRLQGSIHNAYAMGKVKMIASEFETANKVIK NRGSSKTAESGGFVLWQMNPDKWYVELALGGSKVHAGCNGKLVWRHTPWLGPHAAKGPVRPLRRALQGLDPKTTASMFINAMCIGEKKINEDDCFILKIC ADPATLKARSEGPAEIIRHVLFGYFSQKTGLLVHLEDSHLTRIQNNGGDAVYWETTINSFLDDYRLVDGVMIAHSGRSVVTLFRFGDTAMSHTRTRMEEA WAIEEVAFNVPGLSMDCFIPPAELRFASVSETCELPQTQNQWVGAKPDVTPATYQTRVAPLKRENVRWTREN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19540			Protein of unknown function (D...		Lus10024790 [exp]	0	1
AT5G25510			Protein phosphatase 2A regulat...		Lus10013141 [exp]	1.7	0.8934
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022346 [exp]	3.0	0.8897
AT5G25510			Protein phosphatase 2A regulat...		Lus10008104 [exp]	3.2	0.8927
AT5G38110		SGA1, SGA01, AS...	anti- silencing function 1b (....		Lus10033579 [exp]	4.2	0.8442
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10034607 [exp]	4.5	0.8612
AT3G19540			Protein of unknown function (D...		Lus10018707 [exp]	5.3	0.8686
AT2G41820			Leucine-rich repeat protein ki...		Lus10007543 [exp]	6.6	0.8406
AT1G75760			ER lumen protein retaining rec...		Lus10017213 [exp]	8.7	0.8320
AT3G09070			Protein of unknown function (D...		Lus10027785 [exp]	10.7	0.8557
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10007664 [exp]	13.1	0.8246

Compare expression of checked genes

Lus10024790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.