Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43100 806 / 0 Eukaryotic aspartyl protease family protein (.1) AT3G50050 650 / 0 Eukaryotic aspartyl protease family protein (.1) AT5G22850 177 / 2e-48 Eukaryotic aspartyl protease family protein (.1) AT2G36670 161 / 1e-42 Eukaryotic aspartyl protease family protein (.1.2) AT1G08210 160 / 2e-42 Eukaryotic aspartyl protease family protein (.1) AT5G36260 147 / 7e-38 Eukaryotic aspartyl protease family protein (.1) AT1G05840 145 / 2e-37 Eukaryotic aspartyl protease family protein (.1) AT1G65240 138 / 5e-35 Eukaryotic aspartyl protease family protein (.1) AT3G02740 137 / 2e-34 Eukaryotic aspartyl protease family protein (.1) AT3G18490 137 / 2e-34 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018709 [exp] 1238 / 0 AT5G43100 841 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10019309 [exp] 671 / 0 AT5G43100 712 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10011513 [exp] 661 / 0 AT5G43100 687 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021397 [exp] 169 / 1e-45 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10005356 [exp] 164 / 7e-44 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027732 [exp] 152 / 2e-39 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10014391 [exp] 151 / 4e-39 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 152 / 2e-38 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10027001 [exp] 140 / 2e-35 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G020200 [exp] 895 / 0 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G144600 [exp] 753 / 0 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 180 / 2e-49 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 179 / 3e-49 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 151 / 3e-39 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.014G146400 [exp] 143 / 1e-36 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G054900 [exp] 141 / 8e-36 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.016G096700 [exp] 137 / 2e-34 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.015G051800 [exp] 125 / 1e-30 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G053300 [exp] 125 / 4e-30 AT1G49050 611 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10024792 pacid=23178929 polypeptide=Lus10024792 locus=Lus10024792.g ID=Lus10024792.BGIv1.0 annot-version=v1.0 ATGGCTCGACCATGGCCTTCCCTATCCCTATTTGTCCTGATCACATTCAATTTCTACTGCGTCGTATCTGCGACCTTAGATATCGATAGTCTCCGGACGC CGATGATTATTCCTCTCCACCTCTCCATCCCTAATGTATCTTCTCACCGGAGATCTGACTATAACCGACGTCATCTGCAGAATTCAGACCTCCTGCCAAA CGCTCGCATGCGTCTCTATGACGATCTCCTCACCAACGGTTACTACACGACTAGGCTGTATATAGGGTCACCTCCGCAGGAATTCGCTCTTATCGTGGAT ACTGGGAGCACGGTAACCTATGTTCCATGCTCGAGCTGCGAACATTGCGGCAAGCACCAGGATCCAAAGTTTCAACCAGAGTTGTCTAGCACATACCAGG CTGTAACGTGTAACCCCAGTTGTAACTGTGATGACGAAGGAAAACAATGCACTTATGAGAGACGATATGCAGAGCTGAGTTCCAGTAGCGGTGTGCTTGC TGAAGACGTCGTTTCCTTTGGGAATGAAAGTCAGCTCAACCCTCAACGAGCAGTGTTTGGCTGTGAAAATAGGGAAACTGGTGATCTGTACAGCCAGAGG GCCGATGGCATAATTGGCCTTGGTCGTGGCCGGCTTAGTATCGTGGATCAACTAGTTGAGAAGAAAGTCATTAGTGATTCGTTTTCTTTGTGCTATGGTG GGATGGACGTTGGTGGTGGTGCAATGGTTCTTGGAGGGATCTCTCCTCCTGCTGATATGGTGTTTACACATTCAGATCCTTACCGCAGTCCATATTACAA TATTGAGCTGAAGGGCCTGCGGGTGGCTGGGAAATCATTGAAATTAAATCCTAAAGTCTTTGATGGCCGGCATGGGACAGTTTTGGACAGTGGAACCACG TATGCTTACCTTCCTGAAGAAGCATTTGTCCCACTCAAGGATGCTATAATGAAGGAAATTAGTTCTCTCAGACAGATTCATGGCCCTGATCCAAATTACA ATGATATTTGTTTTTCTGGCGCTGGAAGGGACGTTTCTGAACTATCAAAGAAGTTTCCAAAGGTGGACATGGTATTTAGCAATGGTCAAGCATTGACATT ATTTCCAGAAAATTACCTTTTCCGACATACAAAAGTTAGTGGTGCATATTGCTTTGGGATTTTCGAGAATGTAAAGGACCCGACTACTCTTTTGGGAGGA ATCATAGTTCGGAATACGCTTGTAACATATGATCGGGAAAATGACAAGATTGGATTTTGGAAGACTAATTGCTCTGAGCTATGGAAGAGAATGCAAGGTC CTGGAGCTCCTGCTCCACCACCTAGCACTTTACACATTAACAATACTAGTAATAGAAGTGATAATGTGCCTCCTGTTCAATCACCAAACGGTCTGCCTAC AAACTACGTTCCAGGTGAATTCAGAATTGCAATTATAACATTTGATATGTTGATTTTGGTCAACGACACTTCCGTGAAGCCCAATCTCACAGAAGTGGCG GATGTCATTGCTCATGAGCTGGAAGTGGACCATTTACAGGTGCACATGCTGAATGCAACTCCAAAAGGAAAAGAATACGAGGTGAAGTGGGCGATATATC CTGCTTCATCGAAAGAATTCATTTCTAATAGCACAGCAATGAGTATTCTTGTTCGATTAAAGGAGCATAAATTTCAATTTCCAAAGAGATACGGAAGCTA TCAGCTGGTGGAGTGGAGAACTGAACCTCAAAGAAAGTCGTCATGGTGGCAGCAACATTGGGTGGGAGTGGCAATAGGGGTATTGGCAACGACAGTTGCT GGATTATCGAGTGTTGGTCTGTGGTTGGTGTGGAGGAGAAGACAGCAAAGGTTAGGTACATATGAAGCAGTGGGTGGGATGGTTGGGGAGCAAGAGCTTC AGCCGCTGTGA
AA sequence Show only first row Show all	>Lus10024792 pacid=23178929 polypeptide=Lus10024792 locus=Lus10024792.g ID=Lus10024792.BGIv1.0 annot-version=v1.0 MARPWPSLSLFVLITFNFYCVVSATLDIDSLRTPMIIPLHLSIPNVSSHRRSDYNRRHLQNSDLLPNARMRLYDDLLTNGYYTTRLYIGSPPQEFALIVD TGSTVTYVPCSSCEHCGKHQDPKFQPELSSTYQAVTCNPSCNCDDEGKQCTYERRYAELSSSSGVLAEDVVSFGNESQLNPQRAVFGCENRETGDLYSQR ADGIIGLGRGRLSIVDQLVEKKVISDSFSLCYGGMDVGGGAMVLGGISPPADMVFTHSDPYRSPYYNIELKGLRVAGKSLKLNPKVFDGRHGTVLDSGTT YAYLPEEAFVPLKDAIMKEISSLRQIHGPDPNYNDICFSGAGRDVSELSKKFPKVDMVFSNGQALTLFPENYLFRHTKVSGAYCFGIFENVKDPTTLLGG IIVRNTLVTYDRENDKIGFWKTNCSELWKRMQGPGAPAPPPSTLHINNTSNRSDNVPPVQSPNGLPTNYVPGEFRIAIITFDMLILVNDTSVKPNLTEVA DVIAHELEVDHLQVHMLNATPKGKEYEVKWAIYPASSKEFISNSTAMSILVRLKEHKFQFPKRYGSYQLVEWRTEPQRKSSWWQQHWVGVAIGVLATTVA GLSSVGLWLVWRRRQQRLGTYEAVGGMVGEQELQPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43100			Eukaryotic aspartyl protease f...		Lus10024792 [exp]	0	1
AT5G43100			Eukaryotic aspartyl protease f...		Lus10018709 [exp]	2.4	0.8626
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10019260 [exp]	6.2	0.8280
AT3G04470			Ankyrin repeat family protein ...		Lus10027960 [exp]	9.7	0.7700
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000694 [exp]	10.1	0.8218
AT3G24160		PMP	putative type 1 membrane prote...		Lus10000760 [exp]	11.7	0.7963
AT3G59350			Protein kinase superfamily pro...		Lus10025498 [exp]	11.8	0.8044
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10037759 [exp]	13.6	0.8084
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10011546 [exp]	13.7	0.8154
AT1G33490			unknown protein		Lus10039157 [exp]	15.8	0.7940
AT4G25672		CPuORF12	conserved peptide upstream ope...		Lus10027512 [exp]	17.0	0.8135

Compare expression of checked genes

Lus10024792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.