Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56510 279 / 2e-86 APUM12 pumilio 12 (.1) AT1G22240 270 / 6e-84 APUM8 pumilio 8 (.1) AT1G78160 268 / 1e-81 APUM7 pumilio 7 (.1) AT1G35730 257 / 2e-78 APUM9 pumilio 9 (.1) AT4G08840 253 / 5e-77 APUM11 pumilio 11 (.1) AT1G35750 237 / 5e-71 APUM10 pumilio 10 (.1) AT4G08560 210 / 1e-61 APUM15 pumilio 15 (.1) AT5G43090 209 / 8e-61 APUM13 pumilio 13 (.1) AT5G43110 185 / 9e-52 APUM14 pumilio 14 (.1) AT3G20250 154 / 2e-39 APUM5 pumilio 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018710 [exp] 913 / 0 AT5G56510 281 / 3e-87 pumilio 12 (.1) Lus10036469 [exp] 265 / 5e-82 AT1G78160 441 / 5e-149 pumilio 7 (.1) Lus10041139 [exp] 263 / 4e-80 AT1G78160 437 / 4e-146 pumilio 7 (.1) Lus10037976 [exp] 169 / 2e-44 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10033353 [exp] 167 / 1e-43 AT3G20250 732 / 0.0 pumilio 5 (.1) Lus10034808 [exp] 166 / 2e-43 AT3G20250 880 / 0.0 pumilio 5 (.1) Lus10038706 [exp] 160 / 2e-41 AT3G10360 928 / 0.0 pumilio 4 (.1) Lus10001567 [exp] 145 / 1e-36 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10004976 [exp] 144 / 3e-36 AT2G29200 971 / 0.0 pumilio 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G120900 [exp] 389 / 4e-130 AT5G56510 278 / 2e-86 pumilio 12 (.1) Potri.014G020300 [exp] 375 / 1e-124 AT5G56510 260 / 1e-79 pumilio 12 (.1) Potri.003G222300 [exp] 300 / 6e-93 AT5G56510 497 / 4e-168 pumilio 12 (.1) Potri.001G002600 [exp] 293 / 3e-90 AT5G56510 525 / 3e-179 pumilio 12 (.1) Potri.002G095400 [exp] 273 / 2e-82 AT1G78160 473 / 8e-158 pumilio 7 (.1) Potri.001G298000 [exp] 243 / 1e-72 AT5G56510 211 / 2e-60 pumilio 12 (.1) Potri.010G225600 [exp] 169 / 2e-44 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.008G004300 [exp] 160 / 1e-41 AT3G20250 783 / 0.0 pumilio 5 (.1) Potri.003G009900 [exp] 158 / 1e-40 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3) Potri.008G036500 [exp] 157 / 2e-40 AT3G10360 907 / 0.0 pumilio 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00806 [flax] [poplar] PUF Pumilio-family RNA binding repeat
Representative CDS sequence Show only first row Show all	>Lus10024793 pacid=23178850 polypeptide=Lus10024793 locus=Lus10024793.g ID=Lus10024793.BGIv1.0 annot-version=v1.0 ATGTTCCCCTGGCCTAATGGGTTTTACCAAGATCATAACGGCGCCGCCGGAGACCACCACCATCAGCAACAGAAGCAGCCCTCTTTCACTCCCAGCGCCG TCAACACTGATCAACCCTATCCCCCGCCGTCTTTCGCCGCCGATCTCCCTTATCATAATCACCACCCGCAGCAGGAGTCTCTTGAATCTTTGTTTTACTC CCTCAGCCTCTCAGACCGCCGCGGCTTGAATGGGTTCGTCGGGAATAAGGCCGCCACCGAGGGCAGCGGAGGGTTTCTCCCTGGCCCACCAGGTAATCAC TCTTGGTTCCCCAATTACGATGATCATCGGATTTTCAATCAGGGTTCCAGGGGTCGTAATTATCAGACCAATGCAGCTCCCTCCACCGGCGGCGGCTTCG GAGGCGCCGGTGATTACTATCTCCGTCGTCTGCTTGCGTTGCGTGCCGAAGCTGATCCAAGGTTATGGGATGGAAACTTCTCTTACAAGGACCCTACACC GACCCTGAATAGGATTTCGTCGGATTCTCAGGCGAGAAGCAGCGCCAATCCAAGAAGGTCTTCTTCCAATTTTCCCAACAACAGCAGGCGCTCTTCTAAT AGTCATCATCCTCCTCCCTCAACCAATAATAATCTCGACGTTAGTAGGTGGTCTGATTCTATATACGAGACGTCAAACTCTGTGGATGCTTTCAAGGGTC AGATTCTTTCAATGGCTCAGGATCAGCACGGGTGTAGGACCTTGCAAAGGGTAATTGGGACCAAGAAAGTCGAGGAGATTGAGCATGTCTTCTTGGAGCT GAAAGATCATGTGGGTCAGCTTATGCTGGACCAGTTCGGCAACTACGTCGTACAGAAGCTCCTCGATGTTTGCTCTGATGAACAGAGGACTGCGATTCTC AGAATTTTGACCAAGAGTGAAAGTCAGCTCCTCAGAATTTGTCTCAACCCGCATGGGACTCGTGCTATACAGAAGTTGTTGGATCATGTCACTACTTCAC ATCAAGTCTCCATTATAATGCCAAGTCTTAGCCGAGCTGCTCTTTCGTTGACCAAGGACATGAATGGCCATCATGTTATCCAGCATTGCTTGAAGAGTTT CTCTCATGACGATAACAAGTACCTTCTGAACATGGTGGCAGACAACTGCTTTGAGATTGCCACAGACAAAAGTGGCTGCTGTGTGCTTCAGATCTGTGTT GAATACTCTCGAGGAGAGACCAGAGATCGCCTTGTCTCTGAGATCATTGGGAATGCACTGCACTTGTCACAGGACTGCTACGGCAACTACGTAGTGCAGA ACATAGTGGGACTCAAGGTTGAGAAAATCAACGCAGCTCTTCTTGCACAACTTCAAGGGGACTTGGTGAACCTCTCTTGCAACAAGTATGGGAGTAATGT GGTGGAGAAGTGCTTGACTGAGACAACAGAAGAGCAATCTACACAAGTTGTGATGGAGTTGCTTAGTAGTCCCAAGTCTTCTTTGATGCTTGTTGATCCC TTTGGTAACTTTGTCATCCAAACAGCACTCCGCATCTCTCAGTCGGGCCGGAATCCAATGGTGCGGTCAGCCCTGGTGGATCTGGTTGAGAGGAACGCTC CGATGATGAGGAGCAACATCTATGGAAAGAAGGTGCTCTCTGCTTGGTTTGGAAAGAGACAATGGCCATACATGTAG
AA sequence Show only first row Show all	>Lus10024793 pacid=23178850 polypeptide=Lus10024793 locus=Lus10024793.g ID=Lus10024793.BGIv1.0 annot-version=v1.0 MFPWPNGFYQDHNGAAGDHHHQQQKQPSFTPSAVNTDQPYPPPSFAADLPYHNHHPQQESLESLFYSLSLSDRRGLNGFVGNKAATEGSGGFLPGPPGNH SWFPNYDDHRIFNQGSRGRNYQTNAAPSTGGGFGGAGDYYLRRLLALRAEADPRLWDGNFSYKDPTPTLNRISSDSQARSSANPRRSSSNFPNNSRRSSN SHHPPPSTNNNLDVSRWSDSIYETSNSVDAFKGQILSMAQDQHGCRTLQRVIGTKKVEEIEHVFLELKDHVGQLMLDQFGNYVVQKLLDVCSDEQRTAIL RILTKSESQLLRICLNPHGTRAIQKLLDHVTTSHQVSIIMPSLSRAALSLTKDMNGHHVIQHCLKSFSHDDNKYLLNMVADNCFEIATDKSGCCVLQICV EYSRGETRDRLVSEIIGNALHLSQDCYGNYVVQNIVGLKVEKINAALLAQLQGDLVNLSCNKYGSNVVEKCLTETTEEQSTQVVMELLSSPKSSLMLVDP FGNFVIQTALRISQSGRNPMVRSALVDLVERNAPMMRSNIYGKKVLSAWFGKRQWPYM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56510		APUM12	pumilio 12 (.1)		Lus10024793 [exp]	0	1
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10004687 [exp]	11.7	0.9332
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10018017 [exp]	15.2	0.8856
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10026697 [exp]	16.1	0.9201
AT5G36000			unknown protein		Lus10010122 [exp]	19.5	0.8797
					Lus10014949 [exp]	20.7	0.9168
AT1G29140			Pollen Ole e 1 allergen and ex...		Lus10013681 [exp]	21.4	0.9175
AT4G38590		BGAL14	beta-galactosidase 14 (.1.2)		Lus10005070 [exp]	23.9	0.9166
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10016810 [exp]	28.7	0.9149
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10015356 [exp]	31.4	0.8559
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10004688 [exp]	34.5	0.9147

Compare expression of checked genes

Lus10024793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.