Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62440 95 / 1e-22 Protein of unknown function (DUF3223) (.1) AT2G40030 50 / 3e-06 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009570 [exp] 646 / 0 AT5G62440 88 / 7e-20 Protein of unknown function (DUF3223) (.1) Lus10024968 [exp] 476 / 1e-166 AT5G62440 90 / 1e-20 Protein of unknown function (DUF3223) (.1) Lus10024824 [exp] 466 / 3e-164 AT5G62440 84 / 8e-19 Protein of unknown function (DUF3223) (.1) Lus10011903 [exp] 343 / 4e-114 AT5G62440 96 / 1e-22 Protein of unknown function (DUF3223) (.1) Lus10022837 [exp] 248 / 2e-77 AT5G62440 86 / 4e-19 Protein of unknown function (DUF3223) (.1) Lus10002053 [exp] 228 / 7e-70 AT5G62440 98 / 2e-23 Protein of unknown function (DUF3223) (.1) Lus10023594 [exp] 202 / 1e-61 AT5G62440 96 / 1e-23 Protein of unknown function (DUF3223) (.1) Lus10021669 [exp] 97 / 3e-23 AT5G62440 180 / 1e-57 Protein of unknown function (DUF3223) (.1) Lus10035009 [exp] 95 / 2e-22 AT5G62440 179 / 5e-57 Protein of unknown function (DUF3223) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033100 [exp] 89 / 7e-20 AT5G62440 181 / 2e-57 Protein of unknown function (DUF3223) (.1) Potri.013G022500 [exp] 67 / 1e-12 AT5G62440 148 / 7e-45 Protein of unknown function (DUF3223) (.1) Potri.013G021800 [exp] 64 / 5e-12 AT5G62440 156 / 9e-49 Protein of unknown function (DUF3223) (.1) Potri.001G111300 [exp] 51 / 2e-06 AT1G63020 1443 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Potri.001G027232 [exp] 47 / 2e-05 AT2G40030 1596 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.003G196900 [exp] 45 / 0.0001 AT2G40030 1843 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11523 [flax] [poplar] DUF3223 Protein of unknown function (DUF3223)
Representative CDS sequence Show only first row Show all	>Lus10024794 pacid=23178876 polypeptide=Lus10024794 locus=Lus10024794.g ID=Lus10024794.BGIv1.0 annot-version=v1.0 ATGAAGCGGCGAGCCAGCGAGGAAATTGGGGAAGCAGCGAGCGGCGGCCATGGTGTCGGTAAGAAGCAGAAGCTGGAAAACGACGACGTCGGGAACGAGG CGGGGGAAAGCGACGAGGTCGGGAACGAGGCGGTGGTTGTCCGTTTGGGTACGAAGGAATTCACGAGCTCCCGTCAGATGTTTGAAACTTTCCGATCGTG GCTTAGATTCTACTCAGTTCAACCTTTGATCAGCAACCATGATTGCGACGCTATGTTACTGGACTTGGTGAAGAAGGGTCATCCCGACTCAGATACGTTA ATTGGTTCCGGGGTCGCTTCATTCAAAGTCCGACAGAAATACATGTGCAGCGACTTACGCACGTTCATGGTTGTTAGGGAAGACGATTCCAAGGAGGATT TTTGCTACAGAAGCTGTGTAAACAATATCCTTCCATTGCCTGAGGATTTGAAAGATCAAGGTAGCGGTGTTGTCGCTGTTTGTGGATGTCATGTAGAAGG AGGCATGCGGGGTTTGCACAGGAGAAGATCAGCCGAGCTTTGTGAAATATATCAACGACTTAAACAAGACCGAGAAGCCAAGCTAGACGAAGAGGCGGTG AAATTGGTCTCCTTGGGTCCAAAGAAATTCAGGTCCTCCCATCAGATGTATTGGTTCTTTTTCAACTTGCTTCTCAGGTTGCCGCTTAATGAGGCTCTCG TCGAGGAGAATGCCCACGAGATGTTACATGATTTACTGAAGAAGGGCGATCCAGAATCGGGGAAAAAGATTGGTTCTTCTTCTGGTGTCGAATCATTTCA AGTTCGAATCCATCCAGGATATGGTGGTAATCTGCGAAGCTTCTACTTTGTTAGAGGAGATGGCACCATGGAGGATTTCTGTTTCATTAAGTGCGTTGAC GGCATCTTTCCCATTGCAGAGAAAGCCAAAAGATTATATGTTGGTCCTTGTAGCTGTCATCATGAACAAGACTCTGAAGGTGTTGTCACCTTTGGTTGGT GGAAATTCTGGAGTTCCAATCGAATTGTTTCGTTTTTCGCATCGTTGCTTTACGATTATTTGCAAGGTTTTGATCCTCTCGCCGACCGGGTAAGTCATTG GGGGGGTGACAAGGCTGGTGGAGGAAGAGCCAAAAGTGGCGCTGGTGGAGGAAGAGCCAAAAGTGGCGCTGGTGGAGGAAGAGCCAAAAGTGGCGCTGGT GGAGGAAGCAGACGCCGTAGCTCTCGCCTACGTGCTTTGGTTTGA
AA sequence Show only first row Show all	>Lus10024794 pacid=23178876 polypeptide=Lus10024794 locus=Lus10024794.g ID=Lus10024794.BGIv1.0 annot-version=v1.0 MKRRASEEIGEAASGGHGVGKKQKLENDDVGNEAGESDEVGNEAVVVRLGTKEFTSSRQMFETFRSWLRFYSVQPLISNHDCDAMLLDLVKKGHPDSDTL IGSGVASFKVRQKYMCSDLRTFMVVREDDSKEDFCYRSCVNNILPLPEDLKDQGSGVVAVCGCHVEGGMRGLHRRRSAELCEIYQRLKQDREAKLDEEAV KLVSLGPKKFRSSHQMYWFFFNLLLRLPLNEALVEENAHEMLHDLLKKGDPESGKKIGSSSGVESFQVRIHPGYGGNLRSFYFVRGDGTMEDFCFIKCVD GIFPIAEKAKRLYVGPCSCHHEQDSEGVVTFGWWKFWSSNRIVSFFASLLYDYLQGFDPLADRVSHWGGDKAGGGRAKSGAGGGRAKSGAGGGRAKSGAG GGSRRRSSRLRALV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62440			Protein of unknown function (D...		Lus10024794 [exp]	0	1
AT5G62440			Protein of unknown function (D...		Lus10024824 [exp]	1.0	0.7406
AT3G53010			Domain of unknown function (DU...		Lus10042636 [exp]	8.9	0.6244
AT5G44450			methyltransferases (.1)		Lus10028142 [exp]	26.0	0.4644
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10028773 [exp]	28.5	0.4558
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011576 [exp]	29.8	0.5434
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10028217 [exp]	37.5	0.4797
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10020867 [exp]	50.5	0.4479
AT5G12480		CPK7	calmodulin-domain protein kina...		Lus10026300 [exp]	201.2	0.3458
AT1G34050			Ankyrin repeat family protein ...		Lus10026590 [exp]	234.9	0.3183

Compare expression of checked genes

Lus10024794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.