Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16150 503 / 0 ASPGB1 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) AT5G08100 329 / 1e-112 ASPGA1 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) AT4G00590 78 / 5e-16 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) AT5G61540 78 / 6e-16 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034655 [exp] 313 / 7e-106 AT5G08100 507 / 0.0 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10034668 [exp] 312 / 8e-106 AT5G08100 489 / 6e-176 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10017879 [exp] 106 / 9e-28 AT5G08100 157 / 4e-48 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10040935 [exp] 93 / 6e-21 AT4G00590 484 / 8e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10009826 [exp] 89 / 1e-19 AT4G00590 446 / 2e-156 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10009560 [exp] 74 / 2e-14 AT5G61540 518 / 0.0 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10020385 [exp] 68 / 2e-12 AT5G61540 429 / 1e-147 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G022900 [exp] 520 / 0 AT3G16150 556 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.002G122900 [exp] 498 / 6e-179 AT3G16150 540 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.012G063400 [exp] 313 / 2e-106 AT5G08100 485 / 2e-174 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Potri.014G080600 [exp] 78 / 6e-16 AT4G00590 486 / 1e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Potri.014G191900 [exp] 70 / 2e-13 AT5G61540 497 / 2e-177 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF01112 [flax] [poplar] Asparaginase_2 Asparaginase
Representative CDS sequence Show only first row Show all	>Lus10024795 pacid=23178856 polypeptide=Lus10024795 locus=Lus10024795.g ID=Lus10024795.BGIv1.0 annot-version=v1.0 ATGGGAGGTTGGGCTATTGCAGTGCACGGTGGCGCTGGGGTGGACCCAAATCTCCCTCAACAGCGACAGGACGAAGCCAAGCTCCTCCTCACTCGCTGCC TCAATCTCGGCATCTCTTCTCTCCGCTCTCACGATCTCCCCGCCGTCGATGTCGTCGAGCTCGTCGTTCGGGAACTCGAGACCGACCCTCTGTTTAACTC CGGCCGCGGATCTGCTCTCACCGAGAAAGGTACAGCGGAGATGGAAGCTAGCATCATGGACGGAACCACAAGACGATGCGGAGCCGTTTCTGGCGTTACC ACCGTGAAGAACCCAGTCTCCCTCGCCCGTCTCGTTATGGAGAAATCCCCTCATTCTTATCTCGCCTTCTCCGGCGCCGAAGCCTTCGCCCGCCAACAGG GCGTTGAATTGGTGGACAATCATTACTTCATAACAGAGGAGAATCGCGGAATGTTGAAATTGGCTAAGGAAGCCAATTCCATATTGTTCGACTACAGGAT CCCATTAGCAGAGACATGCAGCGCAGAGGCAGCATCATCAATCGCCAAACCAATAATGATGAACGGACTACCGATCAGCATCTACTCTCCGGAGACGGTG GGGTGCGTGGTAGTGGACAGTCAAGGCCGGTGTGCCGCCGCCACGTCGACAGGCGGACTAATGAACAAAATGACCGGAAGGATCGGCGACTCCCCGCTGA TCGGAGCAGGGACGTACGCGGGGAAGCTATGCGGGGTGTCGTGCACAGGGGAAGGGGAGGCGATCATACGCGGAACATTAGCGCGTGACGTGGCGGCGGT GATGGAGTACAAAGGGCTGAAGCTGCAGGCGGCGGTGGACATGGTGATAAAGGAGAGGCTGGACGACGGCGGACAGGCAGGGCTGATAGCGGTGTCAAAT GAGGGAGAAGTGGCGTGTGGGTTCAACGCGAATGGGATGTTCAGAGGGTGGGCGAGTGAAGATGGGTTCATGGAAGTTAGGATCTGGTAG
AA sequence Show only first row Show all	>Lus10024795 pacid=23178856 polypeptide=Lus10024795 locus=Lus10024795.g ID=Lus10024795.BGIv1.0 annot-version=v1.0 MGGWAIAVHGGAGVDPNLPQQRQDEAKLLLTRCLNLGISSLRSHDLPAVDVVELVVRELETDPLFNSGRGSALTEKGTAEMEASIMDGTTRRCGAVSGVT TVKNPVSLARLVMEKSPHSYLAFSGAEAFARQQGVELVDNHYFITEENRGMLKLAKEANSILFDYRIPLAETCSAEAASSIAKPIMMNGLPISIYSPETV GCVVVDSQGRCAAATSTGGLMNKMTGRIGDSPLIGAGTYAGKLCGVSCTGEGEAIIRGTLARDVAAVMEYKGLKLQAAVDMVIKERLDDGGQAGLIAVSN EGEVACGFNANGMFRGWASEDGFMEVRIW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16150		ASPGB1	asparaginase B1, N-terminal nu...		Lus10024795 [exp]	0	1
AT1G31260		ZIP10	zinc transporter 10 precursor ...		Lus10040615 [exp]	2.4	0.8705
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10018500 [exp]	4.0	0.8956
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10030078 [exp]	6.6	0.8500
AT3G18570			Oleosin family protein (.1)		Lus10017992 [exp]	10.2	0.8642
					Lus10016424 [exp]	10.6	0.8590
AT5G53040		GRD, RKD4	RWP-RK domain-containing 4, GR...		Lus10005921 [exp]	11.1	0.8205
AT1G15190			Fasciclin-like arabinogalactan...		Lus10003958 [exp]	11.4	0.8639
AT2G23790			Protein of unknown function (D...		Lus10022496 [exp]	11.6	0.9027
AT5G62990		EMB1692	embryo defective 1692, Ubiquit...		Lus10006104 [exp]	13.9	0.7599
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10037560 [exp]	21.5	0.8604

Compare expression of checked genes

Lus10024795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.