Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34160 231 / 6e-73 CYCD3;1 CYCLIN D3;1 (.1) AT5G67260 216 / 2e-67 CYCD3;2 CYCLIN D3;2 (.1) AT3G50070 214 / 1e-66 CYCD3;3 CYCLIN D3;3 (.1) AT2G22490 142 / 4e-39 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT1G70210 138 / 9e-38 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT5G65420 126 / 4e-34 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT5G10440 114 / 3e-29 CYCD4;2 cyclin d4;2 (.1) AT4G37630 100 / 1e-23 CYCD5;1 cyclin d5;1 (.1.2) AT4G03270 80 / 8e-17 CYCD6;1 Cyclin D6;1 (.1) AT5G02110 71 / 1e-13 CYCD7;1 CYCLIN D7;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018739 [exp] 541 / 0 AT4G34160 237 / 3e-75 CYCLIN D3;1 (.1) Lus10019825 [exp] 239 / 4e-76 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1) Lus10014089 [exp] 233 / 6e-74 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1) Lus10011507 [exp] 227 / 7e-72 AT5G67260 343 / 7e-117 CYCLIN D3;2 (.1) Lus10019317 [exp] 220 / 4e-69 AT5G67260 338 / 4e-115 CYCLIN D3;2 (.1) Lus10027874 [exp] 169 / 1e-48 AT4G34160 226 / 6e-70 CYCLIN D3;1 (.1) Lus10029194 [exp] 129 / 2e-34 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10010709 [exp] 129 / 3e-34 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10002824 [exp] 93 / 1e-21 AT4G34160 142 / 7e-40 CYCLIN D3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G123000 [exp] 298 / 3e-99 AT4G34160 280 / 1e-91 CYCLIN D3;1 (.1) Potri.014G023000 [exp] 284 / 1e-93 AT4G34160 287 / 2e-94 CYCLIN D3;1 (.1) Potri.001G301800 [exp] 245 / 2e-78 AT4G34160 310 / 3e-103 CYCLIN D3;1 (.1) Potri.009G097800 [exp] 243 / 8e-78 AT4G34160 331 / 3e-112 CYCLIN D3;1 (.1) Potri.007G048300 [exp] 242 / 2e-77 AT5G67260 355 / 2e-121 CYCLIN D3;2 (.1) Potri.005G141900 [exp] 240 / 1e-76 AT5G67260 327 / 2e-110 CYCLIN D3;2 (.1) Potri.002G103500 [exp] 154 / 1e-43 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.005G157800 [exp] 150 / 1e-42 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.007G005700 [exp] 130 / 3e-35 AT1G70210 178 / 1e-53 CYCLIN D1;1 (.1) Potri.014G005900 [exp] 128 / 3e-34 AT1G70210 181 / 1e-54 CYCLIN D1;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10024796 pacid=23178956 polypeptide=Lus10024796 locus=Lus10024796.g ID=Lus10024796.BGIv1.0 annot-version=v1.0 ATGGCAAACCCACCACCCTTTCTTCATGACGACGACCTCTATTGCTCCGAAGCTCTCACTCACCCTACTCATGATAATAATACTGATGTTAACGATAAGC AGCAAAAAGACTTGTTCTTTTGGGAAGAGGATGAACTCACATCTCTGTTCGCCAAACAAGAGAAGAACCCTTTGTTCAGGGAGCTCCATTCTCGACCTAA TCTGGGTAGAGCTCGTCACGAAGCTGCAGATTGGATCCTTAACGTCAATACCCATTTCTCCTTCTCCACCCTCACCGCCGTTTTGGCTCTCAATTACCTC GACAGATTCCTCGTTACTTTCCATCTTCAGACCGACAAGCCGTGGATGACTCAACTCGCAGCCGTCGCCTGCCTCTCCGTCGCTGCTAAGGTTGAGGAGA CCCATGTCCCTCTTCTCTTCGACCTTCAGGTCGCAGAAGAGTGTAGGTATGTTTTCGAACCCAAGACGATACAGAGAATGGAGATTCTGGTGCTCTCTTC TCTCAAATGGAGGATGAACCCTGTTACCCCATTATCCTTTCTCGATTTCATGACCAGGAGGATGGGGCTTGGGAGCTCTCTCTGCTGGGAATTCGTCTCA CGGTCATTGTGTTATCTGCCATCAGTAGTGGCTGCGGCAACGATGTTTCATGTAATCAACAACATTGATTCTTCTTCTGTTGGGACGGAACGATCCAAGT TGTTGGCAGTTCTGGAAATCGACTTGGAAAAGATGGAAGGTTGCAGGGAGCTGATAATGGAATTGACAACGTCAGGAAGCGGAAATGGTAACATCCATCA ATCGAAGAAGCGAAGGACATTGGATTCGATTCCGGGGAGCCCGAATGGGGTGATGGATTTGAGCTTCTGTTCAGATAGCTCCAACGATTCCACCACCTCT GCATCTTCCTCTGTCTCTTCTTCGCCAGAGCCGACTCATCGGACAAAGAAGAAGAGCAGAGTAGATGTAGAAGAAGATCACAAGAGTTTCAGTCACCAAT ATCCAGCTTCGTCTGCAGATCTTAACGGCATGATTCCATCTCGCTACTAG
AA sequence Show only first row Show all	>Lus10024796 pacid=23178956 polypeptide=Lus10024796 locus=Lus10024796.g ID=Lus10024796.BGIv1.0 annot-version=v1.0 MANPPPFLHDDDLYCSEALTHPTHDNNTDVNDKQQKDLFFWEEDELTSLFAKQEKNPLFRELHSRPNLGRARHEAADWILNVNTHFSFSTLTAVLALNYL DRFLVTFHLQTDKPWMTQLAAVACLSVAAKVEETHVPLLFDLQVAEECRYVFEPKTIQRMEILVLSSLKWRMNPVTPLSFLDFMTRRMGLGSSLCWEFVS RSLCYLPSVVAAATMFHVINNIDSSSVGTERSKLLAVLEIDLEKMEGCRELIMELTTSGSGNGNIHQSKKRRTLDSIPGSPNGVMDLSFCSDSSNDSTTS ASSSVSSSPEPTHRTKKKSRVDVEEDHKSFSHQYPASSADLNGMIPSRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10024796 [exp]	0	1
AT3G05470			Actin-binding FH2 (formin homo...		Lus10029897 [exp]	8.1	0.8808
AT3G56370			Leucine-rich repeat protein ki...		Lus10025223 [exp]	11.1	0.9008
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10038148 [exp]	13.5	0.8605
AT2G07170			ARM repeat superfamily protein...		Lus10008545 [exp]	17.0	0.8966
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10032469 [exp]	17.3	0.8834
AT2G23530			Zinc-finger domain of monoamin...		Lus10000845 [exp]	19.7	0.8852
AT5G27220			Frigida-like protein (.1)		Lus10033831 [exp]	22.1	0.8249
					Lus10017064 [exp]	27.3	0.8662
AT4G23440			Disease resistance protein (TI...		Lus10024640 [exp]	29.2	0.8131
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10008497 [exp]	31.2	0.8381

Compare expression of checked genes

Lus10024796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.