Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46630 197 / 2e-64 Protein of unknown function (DUF3223) (.1) AT1G45230 124 / 2e-35 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) AT2G40030 109 / 2e-27 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) AT1G63020 55 / 6e-09 SMD2, PolIVa, SDE4, NRPD1a SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) AT5G62440 46 / 3e-06 Protein of unknown function (DUF3223) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018738 [exp] 364 / 4e-130 AT3G46630 201 / 1e-65 Protein of unknown function (DUF3223) (.1) Lus10006488 [exp] 115 / 8e-32 AT1G45230 195 / 8e-63 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Lus10009756 [exp] 115 / 1e-31 AT1G45230 193 / 3e-62 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Lus10002748 [exp] 113 / 5e-29 AT2G40030 1773 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10016332 [exp] 108 / 4e-27 AT2G40030 1086 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10006339 [exp] 53 / 5e-08 AT1G63020 1343 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10002955 [exp] 53 / 5e-08 AT1G63020 1326 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10021669 [exp] 49 / 4e-07 AT5G62440 180 / 1e-57 Protein of unknown function (DUF3223) (.1) Lus10035009 [exp] 48 / 9e-07 AT5G62440 179 / 5e-57 Protein of unknown function (DUF3223) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G023400 [exp] 204 / 5e-67 AT3G46630 218 / 1e-72 Protein of unknown function (DUF3223) (.1) Potri.014G023200 [exp] 180 / 1e-57 AT3G46630 194 / 6e-63 Protein of unknown function (DUF3223) (.1) Potri.002G125700 [exp] 128 / 6e-37 AT1G45230 210 / 6e-69 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Potri.014G028300 [exp] 122 / 6e-35 AT1G45230 221 / 2e-73 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Potri.003G196900 [exp] 108 / 3e-27 AT2G40030 1843 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G027232 [exp] 107 / 5e-27 AT2G40030 1596 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G111300 [exp] 72 / 1e-14 AT1G63020 1443 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Potri.005G033100 [exp] 47 / 2e-06 AT5G62440 181 / 2e-57 Protein of unknown function (DUF3223) (.1) Potri.013G021800 [exp] 40 / 0.0003 AT5G62440 156 / 9e-49 Protein of unknown function (DUF3223) (.1) Potri.013G022500 [exp] 40 / 0.0006 AT5G62440 148 / 7e-45 Protein of unknown function (DUF3223) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11523 [flax] [poplar] DUF3223 Protein of unknown function (DUF3223)
Representative CDS sequence Show only first row Show all	>Lus10024797 pacid=23178978 polypeptide=Lus10024797 locus=Lus10024797.g ID=Lus10024797.BGIv1.0 annot-version=v1.0 ATGGCCGCATCGCTACTCCTCAGGGGCACTCCGATTCTGCGACTTCGTCTCCATTACCACCGCCTCGCTGCTGCTGCTCTCCCGCCTCCACTACGGCGAA CGTTGTGCTCCACTCCCTCTGACTCCACTCAGCCACTCCCTAATATCTCTGTTCCTGATAAGATCACAGCCGCACCCAGAGCTAAGAAACGGGCCAAATG GTTCAACGTCAAGGATCCTGATTACAGGAAATGGAGAGACAAGGAGGATGAGATTCTAAGAGACGTCAAGCCTACCATTCTTCTTGTAAAAAGAATTCTT CACTCTGATAGATATTGCAATGGAGCGCGGCTAGAAGCTGAAGATGCCAAAGCTGTGGTGCAGAAGCTTCTCACTTATCACCCCAACTCAGAAGACAAAA TTGGATGCGGGCTCGATTCTATAATGGTAGATTGCCATCCCCAGTTCAAACGAACGAGGTGCCTGTTTGTTGTGAGAACTGATGGTGCGTGGATAGACTT CTCGTATCAGAAGTGCCTGAGGACATACATTCGACATAAGTACCCGTCCCACGCAGATAGGTTCATCGAGGAACATTTGAAACTGGGGAGCAACTGCTTC TATACATGA
AA sequence Show only first row Show all	>Lus10024797 pacid=23178978 polypeptide=Lus10024797 locus=Lus10024797.g ID=Lus10024797.BGIv1.0 annot-version=v1.0 MAASLLLRGTPILRLRLHYHRLAAAALPPPLRRTLCSTPSDSTQPLPNISVPDKITAAPRAKKRAKWFNVKDPDYRKWRDKEDEILRDVKPTILLVKRIL HSDRYCNGARLEAEDAKAVVQKLLTYHPNSEDKIGCGLDSIMVDCHPQFKRTRCLFVVRTDGAWIDFSYQKCLRTYIRHKYPSHADRFIEEHLKLGSNCF YT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46630			Protein of unknown function (D...		Lus10024797 [exp]	0	1
AT5G46420			16S rRNA processing protein Ri...		Lus10004590 [exp]	2.4	0.9308
AT4G13220			unknown protein		Lus10022819 [exp]	3.5	0.9274
AT1G54500			Rubredoxin-like superfamily pr...		Lus10019005 [exp]	4.1	0.9339
AT4G13220			unknown protein		Lus10011887 [exp]	5.3	0.9187
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Lus10023723 [exp]	5.5	0.9290
AT5G27390			Mog1/PsbP/DUF1795-like photosy...		Lus10015165 [exp]	10.5	0.9149
AT2G36145			unknown protein		Lus10022687 [exp]	11.2	0.9189
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10035346 [exp]	11.2	0.9265
AT4G34290			SWIB/MDM2 domain superfamily p...		Lus10002106 [exp]	11.2	0.9014
AT3G46630			Protein of unknown function (D...		Lus10018738 [exp]	15.0	0.8849

Compare expression of checked genes

Lus10024797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.