Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47056 175 / 1e-52 VFB1 VIER F-box proteine 1 (.1) AT4G07400 166 / 9e-49 VFB3 VIER F-box proteine 3 (.1) AT5G67250 154 / 2e-44 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) AT3G50080 153 / 3e-44 VFB2 VIER F-box proteine 2 (.1) AT3G07550 44 / 2e-05 RNI-like superfamily protein (.1.2) AT5G23340 40 / 0.0007 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018737 [exp] 282 / 2e-93 AT1G47056 638 / 0.0 VIER F-box proteine 1 (.1) Lus10011506 [exp] 149 / 2e-42 AT5G67250 566 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Lus10019319 [exp] 98 / 4e-24 AT5G67250 505 / 3e-176 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Lus10036412 [exp] 52 / 6e-08 AT3G07550 417 / 4e-145 RNI-like superfamily protein (.1.2) Lus10041087 [exp] 50 / 2e-07 AT3G07550 417 / 2e-145 RNI-like superfamily protein (.1.2) Lus10012764 [exp] 40 / 0.0006 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10017027 [exp] 40 / 0.0008 AT1G57790 286 / 6e-93 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G123100 [exp] 222 / 2e-70 AT1G47056 649 / 0.0 VIER F-box proteine 1 (.1) Potri.014G023500 [exp] 209 / 2e-65 AT1G47056 636 / 0.0 VIER F-box proteine 1 (.1) Potri.007G048101 [exp] 150 / 2e-43 AT5G67250 581 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Potri.005G141800 [exp] 146 / 9e-42 AT5G67250 570 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Potri.006G081600 [exp] 92 / 7e-22 AT4G07400 286 / 3e-89 VIER F-box proteine 3 (.1) Potri.017G056400 [exp] 47 / 3e-06 AT3G07550 438 / 2e-153 RNI-like superfamily protein (.1.2) Potri.014G059100 [exp] 39 / 0.001 AT5G07670 451 / 2e-155 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10024798 pacid=23178920 polypeptide=Lus10024798 locus=Lus10024798.g ID=Lus10024798.BGIv1.0 annot-version=v1.0 ATGGGCCAGTCTAGTTCCACGGCTGCCGTCGTCAGCCGCCGGGATTCTAACTTCAGCCACCGCTTCAAATTCAAACCATCCTTCTCCTCCACCTCTCCTC CACCGATGAAGGGCGAAGAGGCTAGTGATTTCGTGGTCTTCGAAGAGCCAGACTATATCTCGGATCTGCCTGATGAGTGCTTGGCTTGCGTTTTCCAATC ACTTAGCTCCGCTGACCGAAAGCGATCCTCCCAGGTCTGCCGCCGGTGGCTCACGATAGAAGGCCAGAGCCGTCACCGTCTCTCGCTCTACGCGCAGGCC GATCTCCTCCCGCTGATACCGACCTTGTTTAGTCGCTTCGACTCGGTCACCAAACTCGCTCTGAAATGCGAGCGTAGATCCACAAGCATCGGTGACGAAG CGCTCACGATGATCTCGCTTCGATGTAGGAACCTGACGCGTCTCAAGCTCCGGTCTTGTCGCGAGATCACCGACGCTGGCCTGGTAGCTTTACGGAGCTT TACAATGGACAGTGTTTTGGGCCGCTTATCATTGACTCAAAGAATCTGA
AA sequence Show only first row Show all	>Lus10024798 pacid=23178920 polypeptide=Lus10024798 locus=Lus10024798.g ID=Lus10024798.BGIv1.0 annot-version=v1.0 MGQSSSTAAVVSRRDSNFSHRFKFKPSFSSTSPPPMKGEEASDFVVFEEPDYISDLPDECLACVFQSLSSADRKRSSQVCRRWLTIEGQSRHRLSLYAQA DLLPLIPTLFSRFDSVTKLALKCERRSTSIGDEALTMISLRCRNLTRLKLRSCREITDAGLVALRSFTMDSVLGRLSLTQRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10024798 [exp]	0	1
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10019197 [exp]	5.7	0.7269
AT4G18230			unknown protein		Lus10024587 [exp]	6.0	0.6814
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10031498 [exp]	7.4	0.7372
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10032234 [exp]	10.6	0.6643
AT2G28690			Protein of unknown function (D...		Lus10040864 [exp]	13.2	0.5836
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10015177 [exp]	13.4	0.7024
AT4G29270			HAD superfamily, subfamily III...		Lus10043042 [exp]	23.9	0.6750
AT3G57990			unknown protein		Lus10021042 [exp]	25.3	0.6398
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10042965 [exp]	28.0	0.6599
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10043012 [exp]	45.7	0.6293

Compare expression of checked genes

Lus10024798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.