Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60060 211 / 2e-65 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) AT5G53900 123 / 3e-32 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT3G15240 118 / 2e-30 Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT2G31280 86 / 3e-18 bHLH bHLH155 ,CPuORF7 conserved peptide upstream open reading frame 7 (.1.2.3.4) AT1G06150 75 / 1e-14 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G27230 67 / 5e-12 bHLH LHW, bHLH156 LONESOME HIGHWAY, transcription factor-related (.1.2) AT5G24352 52 / 1e-08 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT1G64625 51 / 5e-07 bHLH bHLH157 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) AT4G00870 41 / 0.001 bHLH bHLH014 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018736 [exp] 553 / 0 AT1G60060 220 / 4e-69 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10012986 [exp] 210 / 2e-65 AT1G60060 428 / 8e-150 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10029179 [exp] 210 / 2e-65 AT1G60060 429 / 6e-150 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10041936 [exp] 124 / 2e-32 AT5G53900 419 / 7e-146 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Lus10005549 [exp] 112 / 4e-28 AT5G53900 410 / 7e-142 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Lus10033880 [exp] 68 / 2e-12 AT2G31280 481 / 7e-160 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10013348 [exp] 52 / 3e-07 AT2G27230 355 / 6e-112 LONESOME HIGHWAY, transcription factor-related (.1.2) Lus10000609 [exp] 50 / 1e-06 AT2G31280 483 / 2e-161 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10001527 [exp] 49 / 3e-06 AT1G64625 216 / 5e-62 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G024000 [exp] 387 / 1e-134 AT1G60060 243 / 4e-77 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Potri.010G096400 [exp] 217 / 2e-68 AT1G60060 459 / 4e-162 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Potri.011G116400 [exp] 124 / 1e-32 AT5G53900 438 / 3e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.001G397800 [exp] 124 / 2e-32 AT5G53900 439 / 1e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.005G222500 [exp] 76 / 5e-15 AT2G31280 568 / 0.0 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.002G040600 [exp] 68 / 2e-12 AT2G31280 437 / 7e-144 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.001G216900 [exp] 67 / 4e-12 AT2G27230 363 / 3e-113 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.001G086000 [exp] 62 / 2e-10 AT2G27230 248 / 7e-72 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.003G144900 [exp] 62 / 3e-10 AT2G27230 233 / 2e-66 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.006G090000 [exp] 57 / 5e-09 AT1G06150 195 / 6e-53 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024800 pacid=23178972 polypeptide=Lus10024800 locus=Lus10024800.g ID=Lus10024800.BGIv1.0 annot-version=v1.0 ATGGAAGGTGGATTTCCACTGCTTAACTGTTTTCTGCAGTACACATTGAGGAGTTTGTGTTCATCTTCATCAGATTCCAACTCATCCAAATGGGTATATG CTGTGTTCTGGAGAATATTGCCCAGGAATTATCCACCTCCTAAGTGGGATCATCGTGGAACAGCTCTTGATCGCTCCAAAGGAAACAAAAGAAACTGGAT GCTAGTCTGGGAAGATGGCTTCTGTGATTTCTTGGAATGTGAGAGGCAAGGAAATGGATACAAGTTTGGAGCTGATGTGTTCTTCAAATTGTCTCATGAA GTATATAGTTATGGAGAAGGATTATTAGGGAAAGTTGCAGCAGAGAGGAGTCACAAATGGGTTTTCAGTGAATCAACCAATGAGCCTGATCCAAATCCCA CCTCCTCCTGGAATATGGCACTTGAACCTCAACCAAGAGCTTGGGAAAGCCAGTTCCACTCAGGCATTCAGACAATTGCTATCATTTCAGTCACAGAAGG CATCATTCAACTGGGCTCATTTCACAAGATTGTGGAAGACACAAATCTGGTGATCAACATTCAGAGAAAATTCAGCTATCTGCAGAGCATACCTGGATCA TTTTCCACTCAAAGAACAAACATACAGATCCAACACACAAACGTTGACAGGAAAGAATCGGCAGCCGAAAAGAGACAGACGATCGGGATGAAGAGATCGT TTGATCGAAGAACGGATGATGAGGATTTCCCTTTCAAGTCCATCAACTTAGGATGGAACAGCCCACAATGTGGAAGTGGCCCTGAGCATTTCATCTTCTC AATACCGCCTCTCTTGCCCACCATGTCTTTTAGCTGTAGGCCAAAGCTCCATTATTCTCATGACCGTACTGGAGATGTAGGAAACTGCTGCAGCAATGGC ATACCTAGCAACACAATCAAGTCTGAAGATGAGGGTAACTAA
AA sequence Show only first row Show all	>Lus10024800 pacid=23178972 polypeptide=Lus10024800 locus=Lus10024800.g ID=Lus10024800.BGIv1.0 annot-version=v1.0 MEGGFPLLNCFLQYTLRSLCSSSSDSNSSKWVYAVFWRILPRNYPPPKWDHRGTALDRSKGNKRNWMLVWEDGFCDFLECERQGNGYKFGADVFFKLSHE VYSYGEGLLGKVAAERSHKWVFSESTNEPDPNPTSSWNMALEPQPRAWESQFHSGIQTIAIISVTEGIIQLGSFHKIVEDTNLVINIQRKFSYLQSIPGS FSTQRTNIQIQHTNVDRKESAAEKRQTIGMKRSFDRRTDDEDFPFKSINLGWNSPQCGSGPEHFIFSIPPLLPTMSFSCRPKLHYSHDRTGDVGNCCSNG IPSNTIKSEDEGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60060			Serine/threonine-protein kinas...		Lus10024800 [exp]	0	1
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10004684 [exp]	2.0	0.9610
AT3G09870			SAUR-like auxin-responsive pro...		Lus10030263 [exp]	2.6	0.9640
AT3G20395			RING/U-box superfamily protein...		Lus10021524 [exp]	3.5	0.9436
AT1G03220			Eukaryotic aspartyl protease f...		Lus10034035 [exp]	3.5	0.9578
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10009799 [exp]	4.5	0.9548
AT2G24800			Peroxidase superfamily protein...		Lus10020097 [exp]	5.7	0.9242
AT5G62360			Plant invertase/pectin methyle...		Lus10031138 [exp]	5.9	0.9482
AT5G25620		YUC6	YUCCA6, Flavin-binding monooxy...		Lus10041729 [exp]	7.2	0.9274
AT1G60060			Serine/threonine-protein kinas...		Lus10018736 [exp]	7.9	0.9394
AT5G06270			unknown protein		Lus10004209 [exp]	8.9	0.9196

Compare expression of checked genes

Lus10024800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.