Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47128 632 / 0 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT5G43060 613 / 0 Granulin repeat cysteine protease family protein (.1) AT3G19390 512 / 2e-180 Granulin repeat cysteine protease family protein (.1) AT1G09850 423 / 2e-145 XBCP3 xylem bark cysteine peptidase 3 (.1) AT4G36880 420 / 3e-145 CP1 cysteine proteinase1 (.1) AT3G19400 398 / 7e-137 Cysteine proteinases superfamily protein (.1.2) AT4G23520 397 / 1e-136 Cysteine proteinases superfamily protein (.1) AT4G35350 381 / 2e-130 XCP1 xylem cysteine peptidase 1 (.1.2) AT4G11310 376 / 2e-128 RD21A, RD21 Papain family cysteine protease (.1) AT1G20850 373 / 4e-127 XCP2 xylem cysteine peptidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018735 [exp] 741 / 0 AT1G47128 491 / 3e-172 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10014087 [exp] 592 / 0 AT5G43060 622 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10002827 [exp] 572 / 0 AT1G47128 609 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10027877 [exp] 566 / 0 AT5G43060 597 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10019827 [exp] 478 / 5e-168 AT5G43060 501 / 1e-177 Granulin repeat cysteine protease family protein (.1) Lus10006130 [exp] 406 / 7e-139 AT1G09850 535 / 0.0 xylem bark cysteine peptidase 3 (.1) Lus10020723 [exp] 362 / 8e-123 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1) Lus10006542 [exp] 360 / 4e-122 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10030722 [exp] 360 / 4e-122 AT4G35350 511 / 0.0 xylem cysteine peptidase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G024100 [exp] 687 / 0 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.001G302100 [exp] 593 / 0 AT1G47128 598 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.009G098100 [exp] 584 / 0 AT1G47128 607 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.007G047600 [exp] 474 / 1e-166 AT5G43060 461 / 9e-162 Granulin repeat cysteine protease family protein (.1) Potri.005G141600 [exp] 457 / 6e-160 AT4G36880 437 / 1e-153 cysteine proteinase1 (.1) Potri.005G232900 [exp] 398 / 1e-135 AT1G09850 594 / 0.0 xylem bark cysteine peptidase 3 (.1) Potri.004G207600 [exp] 391 / 2e-134 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.002G005700 [exp] 379 / 1e-129 AT1G20850 531 / 0.0 xylem cysteine peptidase 2 (.1) Potri.005G256000 [exp] 375 / 7e-128 AT1G20850 539 / 0.0 xylem cysteine peptidase 2 (.1) Potri.012G090900 [exp] 370 / 5e-126 AT5G50260 561 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF00396 [flax] [poplar] Granulin Granulin CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10024801 pacid=23178886 polypeptide=Lus10024801 locus=Lus10024801.g ID=Lus10024801.BGIv1.0 annot-version=v1.0 ATGGGGTCTATCCGATCCTCTGCCCCCATCTGCTTGCTCATCTCCCTCCTATTCACAATCTCCTCCGCCTTGGACATGTCCATAATCTCCTACGACCAAA CCCACCAAGATGCCTCTGCCGTTTCCGCCAGCTGGAGAACCGACGACGAGGTCATGACCATTTACGAGGACTGGCTAGCCAAGCACGCCAAATCCTACAA CGCTCTCGGCGAGAAGGAGAAGCGTTTCCAGATCTTCAAGGACAACCTCCGCTTCATCGACCACCACAACTCCTTGAACCAGTCCTACACCGTCGGCCCC AACAAGTTCGCCGATCTCACCAACGACGAGTACCGCTCCAAGTACCTTGGCCTCCGCGGCGGTCAGAGCAAGCTCAAGGAGTCCAAGCCTTCCCACCGCT ACGCGCCGCGCCTCGGTGATTCCTTGCCCGATTCCATCGACTGGAGGGAGAAAGGCGCCGTCGCTGCTGTCAAGGACCAAGGCGGTTGCGGGAGTTGCTG GGCGTTCTCGACGATAGCGGCAGTGGAAGGGATAAACCAGATAGTGACGGGGGATCTGATCACGTTGTCAGAGCAAGAGCTGGTGGACTGCGACACTAGC TACAATGAAGGATGCAACGGAGGTCTTATGGACTATGCATTTGAGTTCATCATTAAGAATGGCGGCATCGACACCGACGATGACTACCCTTACAAGGGTT ACGACGGCAGATGCGACTCTTACAGGAAAAGCAACGCCAAGGTAGTTTCAATCGAGAACTACGAGGATGTTCCGATCAACGACGAGTCCGCCCTCCAGAA GGCCGTCGCTAACCAGCCCATTGCCGTTGCTATTGAAGCTGGTGGCAGAGGTTTCCAACTATACACTTCGGGTATCTTCAGCGGACCGTGTGGAACGCAA CTGGACCACGGAGTGGCAACAGTGGGATATGGAAGCGACGGTGGTATGGATTACTGGATAGTGAGGAACTCATGGGGTGGGAGTTGGGGAGAGAAAGGGT ACCTAAGGATGGAAAGGAACATCGCAGCAAAGACAGGGTTATGCGGCATTGCGATGGAAGCATCGTACCCGATCAAGGAAGGACAGAACCCGCCAAACCC AGGTCCATCACCACCAACACCAGTGACTCCTCCCAGTGTTTGTGACGATTACTACTCATGCCCTTCCAGCGAAACCTGCTGCTGCATTTTCGCATTTGGA CAGTACTGTTTCGAATGGGGATGTTGTCCTCTTGAAGGTGCCACCTGCTGTGAAGACCATTACAGTTGCTGCCCACATGAGTACCCTGTCTGCAATGTCA ACCAGGGAACCTGTATGATGAGCAAGAACAATCCATTGGCTGTGAAGTCAATGAAGAGCAACAGGGCGAAACCTCGCTTTAATCTTGGGCTTGGAAGGAG GAGCAATGCATAA
AA sequence Show only first row Show all	>Lus10024801 pacid=23178886 polypeptide=Lus10024801 locus=Lus10024801.g ID=Lus10024801.BGIv1.0 annot-version=v1.0 MGSIRSSAPICLLISLLFTISSALDMSIISYDQTHQDASAVSASWRTDDEVMTIYEDWLAKHAKSYNALGEKEKRFQIFKDNLRFIDHHNSLNQSYTVGP NKFADLTNDEYRSKYLGLRGGQSKLKESKPSHRYAPRLGDSLPDSIDWREKGAVAAVKDQGGCGSCWAFSTIAAVEGINQIVTGDLITLSEQELVDCDTS YNEGCNGGLMDYAFEFIIKNGGIDTDDDYPYKGYDGRCDSYRKSNAKVVSIENYEDVPINDESALQKAVANQPIAVAIEAGGRGFQLYTSGIFSGPCGTQ LDHGVATVGYGSDGGMDYWIVRNSWGGSWGEKGYLRMERNIAAKTGLCGIAMEASYPIKEGQNPPNPGPSPPTPVTPPSVCDDYYSCPSSETCCCIFAFG QYCFEWGCCPLEGATCCEDHYSCCPHEYPVCNVNQGTCMMSKNNPLAVKSMKSNRAKPRFNLGLGRRSNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10024801 [exp]	0	1
AT4G03020			transducin family protein / WD...		Lus10012779 [exp]	2.0	0.8487
AT5G01450			RING/U-box superfamily protein...		Lus10002487 [exp]	2.0	0.8770
AT3G45600		TET3	tetraspanin3 (.1)		Lus10038473 [exp]	2.4	0.8325
AT5G22850			Eukaryotic aspartyl protease f...		Lus10021397 [exp]	2.4	0.8610
AT5G55060			unknown protein		Lus10043118 [exp]	3.2	0.8486
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10026626 [exp]	3.7	0.8313
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10009232 [exp]	5.2	0.8607
AT5G59050			unknown protein		Lus10001433 [exp]	10.8	0.8098
AT3G26730			RING/U-box superfamily protein...		Lus10031993 [exp]	11.8	0.7766
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10010605 [exp]	12.2	0.8089

Compare expression of checked genes

Lus10024801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.