Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04170 853 / 0 EIF2 GAMMA, EIF2GAMMA eukaryotic translation initiation factor 2 gamma subunit (.1) AT4G18330 766 / 0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT2G18720 743 / 0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1) AT4G02930 81 / 3e-16 GTP binding Elongation factor Tu family protein (.1) AT4G20360 76 / 1e-14 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT1G18070 49 / 5e-06 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT5G10630 45 / 0.0001 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT5G08650 44 / 0.0002 Small GTP-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018734 [exp] 942 / 0 AT1G04170 852 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10005680 [exp] 928 / 0 AT1G04170 846 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10020312 [exp] 927 / 0 AT1G04170 845 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10027995 [exp] 77 / 6e-15 AT4G02930 763 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10008161 [exp] 77 / 8e-15 AT4G02930 759 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10043342 [exp] 70 / 2e-12 AT4G20360 758 / 0.0 RAB GTPase homolog E1B (.1) Lus10019493 [exp] 62 / 3e-10 AT4G20360 668 / 0.0 RAB GTPase homolog E1B (.1) Lus10041946 [exp] 61 / 7e-10 AT4G20360 754 / 0.0 RAB GTPase homolog E1B (.1) Lus10017957 [exp] 61 / 1e-09 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G129100 [exp] 886 / 0 AT1G04170 866 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Potri.003G104900 [exp] 866 / 0 AT1G04170 848 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Potri.002G215900 [exp] 80 / 5e-16 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.014G138100 [exp] 79 / 2e-15 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.003G121600 [exp] 75 / 3e-14 AT4G20360 714 / 0.0 RAB GTPase homolog E1B (.1) Potri.001G110200 [exp] 73 / 1e-13 AT4G20360 716 / 0.0 RAB GTPase homolog E1B (.1) Potri.013G093400 [exp] 50 / 2e-06 AT1G18070 797 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Potri.019G062500 [exp] 47 / 2e-05 AT1G18070 806 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Potri.006G275500 [exp] 44 / 0.0002 AT5G10630 757 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Potri.011G140100 [exp] 43 / 0.0005 AT1G17220 1160 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain CL0023 [flax] [poplar] PF09173 [flax] [poplar] eIF2_C Initiation factor eIF2 gamma, C terminal CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2
Representative CDS sequence Show only first row Show all	>Lus10024802 pacid=23178930 polypeptide=Lus10024802 locus=Lus10024802.g ID=Lus10024802.BGIv1.0 annot-version=v1.0 ATGTCACGGAAAGGTTTGATGGAGCAAGACTTGAGTAAGCTGGATGTATCTCAGCTACATCCGCTCTCCCCTGAAGTGATATCTCGTCAGGCCACTATTA ATATAGGCACCATCGGTCATGTGGCACATGGCAAGTCAACTGTCGTGAAAGCAATATCTGGTGTCCAGACGGTTCGTTTTAAAAATGAGTTGGAGCGTAA TATTACAATTAAGCTTGGGTACGCAAATGCAAAGATATACAAATGCGAAGATGAAAGATGCCCTAGGCCTATGGCGTACAAGGCTTATGGGAGTGGAAAG GAAGACAGTCCCATGTGTGATGTGCCTGGTTTTGAGGGCGCTAGGATGAAATTGCTCAGACATGTCTCCTTTGTTGATTGTCCAGGCCATGATATTCTCA TGGCAACGATGCTTAATGGAGCAGCAATTATGGATGGAGCTTTGCTTCTGATAGCTGCAAATGAAAGCTGTCCCCAACCACAGACTTCTGAGCATCTTGC TGCTGTTGAAATAATGCGTCTTAAGCACATAATCATTCTTCAGAATAAAGTTGATCTTGTCCAGGAAAATGTGGCTACCAACCAGCACGAAACTATTCAA AAGTTTATCCAGGGAACAGTTGCTGAGGGTGCTCCTGTAGTGCCAATCTCAGCGCAGCTGAAGTACAATATTGATGCCGTCTGCGAGTACATTGTGAAGA AAATTCCTATTCCTAAGAGGGTCTTTAGTTTACCACCCAACATGATTGTGATTCGATCTTTTGACGTGAACAAGCCTGGTTTTGAGGTTGATGATATCAA AGGTGGAGTTGCTGGAGGAAGTATCCTGACGGGAGTGTTAAAGGTCAACCAACGTATCGAGGTTCGTCCCGGGATTGTAGTTAAAGACGAGAATGGGAAC ATTAAGTGCACTCCTATCTACACTCGGATTATCAGTTTATATGCTGAGCAGAACGAACTTCAATTTGCGGTGCCAGGAGGTCTGATTGGTGTCGGGACCA CAATGGATCCCACGTTGACACGTGCCGACAGGCTTGTAGGACAGGTTCTCGGAGATATCGGGTCGCTCCCAGAAGTTTTTGTTGAGCTTGAGGTGAATTT CTTCCTTCTGCGGCGACTTATTGGTGTGAGGACAAAAGGGTCGGAGAAGCAAGGGAAGGTGTCAAAGCTCGTCAAGGGAGAGATTCTGATGCTCAACATT GGCTCCATGTCGACCGGAGCTCGAGTGCTTGCTGTGAGGAACGATCTGGCGAAGCTGCAATTGACATCCCCGGTGTGTACAAGCAAAGGAGAGAAGATTG CGCTGAGTAGAAGAGTGGAGAAGCATTGGCGGCTGATCGGATGGGGGATGATTCAGGCTGGAACCACCCTTGAAGTCCCTCCTTGCCCTCTTTAA
AA sequence Show only first row Show all	>Lus10024802 pacid=23178930 polypeptide=Lus10024802 locus=Lus10024802.g ID=Lus10024802.BGIv1.0 annot-version=v1.0 MSRKGLMEQDLSKLDVSQLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCPRPMAYKAYGSGK EDSPMCDVPGFEGARMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLKHIIILQNKVDLVQENVATNQHETIQ KFIQGTVAEGAPVVPISAQLKYNIDAVCEYIVKKIPIPKRVFSLPPNMIVIRSFDVNKPGFEVDDIKGGVAGGSILTGVLKVNQRIEVRPGIVVKDENGN IKCTPIYTRIISLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGDIGSLPEVFVELEVNFFLLRRLIGVRTKGSEKQGKVSKLVKGEILMLNI GSMSTGARVLAVRNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGMIQAGTTLEVPPCPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10024802 [exp]	0	1
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011898 [exp]	1.4	0.9703
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10017368 [exp]	1.7	0.9713
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10010163 [exp]	4.0	0.9660
AT2G40290			Eukaryotic translation initiat...		Lus10017435 [exp]	4.9	0.9593
AT3G11940		AML1, ATRPS5A	ARABIDOPSIS MINUTE-LIKE 1, rib...		Lus10008436 [exp]	5.7	0.9675
AT5G22330		ATTIP49A, RIN1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10011283 [exp]	8.6	0.9406
AT3G53740			Ribosomal protein L36e family ...		Lus10024402 [exp]	9.7	0.9609
AT2G19540			Transducin family protein / WD...		Lus10024403 [exp]	9.9	0.9424
AT1G09590			Translation protein SH3-like f...		Lus10030607 [exp]	10.8	0.9566
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10007805 [exp]	12.1	0.9588

Compare expression of checked genes

Lus10024802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.