Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43020 630 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G67200 565 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G50230 529 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 319 / 2e-99 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G48480 281 / 2e-85 RKL1 receptor-like kinase 1 (.1) AT5G05160 278 / 2e-84 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT3G08680 277 / 6e-84 Leucine-rich repeat protein kinase family protein (.1.2) AT1G60630 270 / 5e-81 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 269 / 5e-81 RLK902 receptor-like kinase 902 (.1) AT1G10850 267 / 6e-80 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018733 [exp] 1117 / 0 AT5G43020 687 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036426 [exp] 595 / 0 AT5G67200 765 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041101 [exp] 593 / 0 AT5G67200 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013073 [exp] 414 / 5e-136 AT1G10850 820 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019113 [exp] 315 / 5e-98 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 311 / 2e-96 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 310 / 2e-96 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 310 / 4e-96 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021383 [exp] 297 / 4e-91 AT3G08680 667 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G024400 [exp] 710 / 0 AT5G43020 628 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G046900 [exp] 625 / 0 AT5G43020 575 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G141200 [exp] 592 / 0 AT5G67200 734 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G144900 [exp] 382 / 6e-124 AT1G10850 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 313 / 2e-97 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 309 / 3e-96 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 296 / 2e-90 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.010G097200 [exp] 259 / 4e-77 AT1G10850 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 251 / 2e-74 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G068800 [exp] 245 / 6e-72 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10024803 pacid=23178928 polypeptide=Lus10024803 locus=Lus10024803.g ID=Lus10024803.BGIv1.0 annot-version=v1.0 ATGGAGAAAAAGCTGCTACCTTTGTTGCTTCTTCTACTCACCTTCTCACTCACTTCTTCACTCCCTGACGACGCCCAATCTCTTCTCTCTTTCAAATCCA AGGCCGATTTGAACGGCCTCCTCCACTACCCTCACAAATCCACTCCCCATTTCTGCCGTCTCTGGCAAGGCGTCGAATGCTCCGGCGGAAACAGAGTAGT CCGCCTCGTCCTTCATGATATTCCTCTCGCCGGCGTCTTCCCTCCCGACACTTTGACCCGACTTGACCAGCTCCGGGTCCTCTCCCTCCAGAACAACTCC CTCACCGGACCTATCCCTGACCTCTCCTCCCTCGTCAATCTTAAATCCCTTTTCCTCGACCATAACGACTTCTCCGGTTCATTCCCTCCTTCCCTCGCTT CCCTCCACCGTCTCCGCACTCTCGATCTCTCCTTCAATAGCCTCTCCGGTCCTTTGCCTTCTTGGCTCACTGCCCTTGACCGCCTCAACACTCTCCGCCT CGAGTGGAATCGCTTTAACGAATCCATCCCGCCGCTCAACCAGTCTTCTCTCGACAGCTTCAACGTCTCTCACAACAACCTCACCGGCGCCATTCCCGTA ACTCCTACTTTTCTCCGCCTCCAGATCTCGTCCTTCTCTACCAACCCTAACCTCTGCGGCAAGATCGTACACAAGGAATCCCGTCCTGGATCCCCATTCT TCGGCTTGCCGTCGTTGTCGTCTGCACTAGCAGCTCCACCGCCATCGTCCGTACAACTCGACCAATCAGCAGAGCTCCATGGCGTCAGTCTATCGCATCC GAATCACAAGAGAAAATCAGTGATAATCGGATTCTCCGTAGCGGTTTTCGCTCTCATCGCGTCGTTGCTCCTCTGTTTCGTAATGGCGATGAGGGGAAAA CAGAGGAAGAAAAAGACCTCATCCAAGAAATGCATCGATCTGTCTCTTGACCACGCCGACGACGGAGGAGATACGGTGGTGATGCAAATAGACGAGAAGG GAAACGAGCTGGAAGAGAAAGTGAAGAAGGCGCAGCAAGGGTTGCAGCAGATGGGTAAGAGTGGGAACTTGATGTTCTGCGCAGGGGAAGCGCAGGTTTA CACGCTAGATCAGCTGATGAGAGCTTCTGCTGAGCTGTTGGGTAAGGGCACGGTGGGGACAACTTACAAGGCGGTGCTCGACGACCGTCTGATCGTCTGC GTGAAGCGTCTTGACGCCGGGAGATTGATCAACTCCGAATCGTCGGAGACCAGCAGCAAGGAATCGTTCGAGCAGCATATGGAATCAGTGGGTGGACTCA GACACCCTAATCTGGTTCCTCTCAGAGCATATTTCCAAGCCAGGCAGGAACGCCTCCTCGTCTACGATTACCAGCCCAACGGCAGCTTACACTCCCTCAT CCACGGGTCGAAATCGGCGAGAGGGAAGCCGCTGCACTGGACATCGTGCTTGAAGATAGCGGAGGACGTGGCGCAGGGACTGGCTTACATCCACCAAGCA TGGAGGCTGGTCCACGGAAACCTCAAGTCAACCAACGTCCTCCTCGGACCGGACTTCGAGGCCTGCGTCACCGACTACTGCCTAGCCGTACTCGCTCAAA TACCGGTGGCCGAAGATCCGGATGCGGCGGCTTACAAGGCGCCGGAAGTGGGAAGTGCGACGTCGTCGGCGAAAGGGGATGTGTATGCGTTTGGGATTCT GCTGATGGAGCTGTTAACGGGGAAGGCGCCGTCGGAGCTAGTGTTTATGATGCCGGAGGAAATGATGAAGTGGGTGAGGTGCGGCGGTGGGGATGATGAG AATGAGGAGGAAGAAGAAGAAGAAGTAGAAGGAAAGATCAGGAGAGGGAATAAGAGGATGGAGATGCTTTGGGAGGTGGCGGTGGGTTGTAGGGCGCCGG CTGCGGAGCAGAGGCCGACAATGTGGCAAGTGTTGAAGATGTTGCAGGAGATTAAAGAGAGTGTGCCGTTGGAGGATGAGGGAGCTGAGGCTAACTCGTA A
AA sequence Show only first row Show all	>Lus10024803 pacid=23178928 polypeptide=Lus10024803 locus=Lus10024803.g ID=Lus10024803.BGIv1.0 annot-version=v1.0 MEKKLLPLLLLLLTFSLTSSLPDDAQSLLSFKSKADLNGLLHYPHKSTPHFCRLWQGVECSGGNRVVRLVLHDIPLAGVFPPDTLTRLDQLRVLSLQNNS LTGPIPDLSSLVNLKSLFLDHNDFSGSFPPSLASLHRLRTLDLSFNSLSGPLPSWLTALDRLNTLRLEWNRFNESIPPLNQSSLDSFNVSHNNLTGAIPV TPTFLRLQISSFSTNPNLCGKIVHKESRPGSPFFGLPSLSSALAAPPPSSVQLDQSAELHGVSLSHPNHKRKSVIIGFSVAVFALIASLLLCFVMAMRGK QRKKKTSSKKCIDLSLDHADDGGDTVVMQIDEKGNELEEKVKKAQQGLQQMGKSGNLMFCAGEAQVYTLDQLMRASAELLGKGTVGTTYKAVLDDRLIVC VKRLDAGRLINSESSETSSKESFEQHMESVGGLRHPNLVPLRAYFQARQERLLVYDYQPNGSLHSLIHGSKSARGKPLHWTSCLKIAEDVAQGLAYIHQA WRLVHGNLKSTNVLLGPDFEACVTDYCLAVLAQIPVAEDPDAAAYKAPEVGSATSSAKGDVYAFGILLMELLTGKAPSELVFMMPEEMMKWVRCGGGDDE NEEEEEEEVEGKIRRGNKRMEMLWEVAVGCRAPAAEQRPTMWQVLKMLQEIKESVPLEDEGAEANS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43020			Leucine-rich repeat protein ki...		Lus10024803 [exp]	0	1
AT3G54400			Eukaryotic aspartyl protease f...		Lus10024148 [exp]	2.0	0.9459
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Lus10038729 [exp]	4.9	0.9507
AT5G25090		AtENODL13	early nodulin-like protein 13 ...		Lus10026880 [exp]	5.5	0.9467
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10039168 [exp]	5.9	0.9445
AT1G16630			unknown protein		Lus10006845 [exp]	6.8	0.9478
AT2G40510			Ribosomal protein S26e family ...		Lus10029042 [exp]	9.5	0.9035
AT5G58930			Protein of unknown function (D...		Lus10018206 [exp]	11.5	0.9225
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10039033 [exp]	12.0	0.9375
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Lus10042585 [exp]	14.3	0.9006
AT1G11800			endonuclease/exonuclease/phosp...		Lus10020021 [exp]	15.5	0.9197

Compare expression of checked genes

Lus10024803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.