Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47830 173 / 2e-52 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018732 [exp] 285 / 3e-96 AT5G47830 174 / 4e-56 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G024500 [exp] 179 / 6e-55 AT5G47830 190 / 2e-62 unknown protein Potri.002G123400 [exp] 178 / 1e-54 AT5G47830 187 / 4e-61 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024804 pacid=23178909 polypeptide=Lus10024804 locus=Lus10024804.g ID=Lus10024804.BGIv1.0 annot-version=v1.0 ATGGACGGCGTGATGACTGATGTGCTAGCTATAGGTGTAATACTGTTTGTAAGAAGTAGCCTGTTCGCCGCGATTTCATGGTATGGCTTGAAACAGAGGA ATTGGATCTGCCACAATGATGAACCGTGGCCAAGGGCTGTGAGCTTCAGTCTCTACACAAGATACTGCCTGTTCGGAAACCTCCTCGTAGGTCCTTGTGG AAAAAGCCGGAAGCAGGATGGGTTAATCTTAACATTGATGGCAGCCGGCTGGAGGACCCTGTGTCCACCTCATACGGGACGAACATGGTATTTGGGTTGC AGGATTCTACAATCGTGCGGGCTCGCAGGAAATTCTACAGGCGGAACTCTTGACAATTCGAGATGGGATCTCCCTTCTCCAAATGTTAGTCTTTCAGAGA AGCAAATGCAGTGGCAGATTTTGTTGCTAAATTGGGTCATGATCAAGAGAATTGGAGGAACCCTCCCACTGCAGGAGCTGGCGGCCGGAGGCGAACTAGG CCTCACCTCTCCCCTTTTTATTTATACCCATCACCGACTGTTGGATCCAGCAGGACTCATCACCGACCGTTGGATCAATGAATCAGCAGGTGCTGATTCC AAGAAAAATTGGTTTGGAAGAAGACCAGGGGGAAGGATCAATCACCCTACATCACTACATCGGGAAGCAGAGCCAGTCCCTCTCCTTTCAATCAAAGATC GCCGTACTACAATATCAGCAGCTCTTCCTGATGCCATGGACACGGAAATGACCGACACGGCGGCGGCTTTGCCCGGCGACGTCCGAGAGCTACTCGCATT GGCGCGACAACTAATCACTCAAGGCAAACCCTCCCAGGCGCTTCAAATGGTGATGACAGCTGCCCGGAATCAAGGTGGAGAAGATGCAATGTTCCAGTCT TTGACTCGTGCTCGTGAATTGTACCGAATGAGACTACAAGAAAGCAACTCCGTCGATCAGCTGGCAACTTTATTTGCAGAATGTGCCATTGCTGGAACAG AGTCTCCCAAACCTCAAGTGCAATGTAACGCATCTGGGGTGGTGACACCGAATATTCATGAGCGCTCCATACTTGCAGAAACTGGCAGAAACCAGCTCGT TCTGGATGCATTTGCGGATGGGAGCAGTTTCATCTGCTTACAGTGTGGCGGTCTTGTGAGCGTCAATCGCAAGGATGAGCACTTCACCTACTGGTGTAGC AACTGA
AA sequence Show only first row Show all	>Lus10024804 pacid=23178909 polypeptide=Lus10024804 locus=Lus10024804.g ID=Lus10024804.BGIv1.0 annot-version=v1.0 MDGVMTDVLAIGVILFVRSSLFAAISWYGLKQRNWICHNDEPWPRAVSFSLYTRYCLFGNLLVGPCGKSRKQDGLILTLMAAGWRTLCPPHTGRTWYLGC RILQSCGLAGNSTGGTLDNSRWDLPSPNVSLSEKQMQWQILLLNWVMIKRIGGTLPLQELAAGGELGLTSPLFIYTHHRLLDPAGLITDRWINESAGADS KKNWFGRRPGGRINHPTSLHREAEPVPLLSIKDRRTTISAALPDAMDTEMTDTAAALPGDVRELLALARQLITQGKPSQALQMVMTAARNQGGEDAMFQS LTRARELYRMRLQESNSVDQLATLFAECAIAGTESPKPQVQCNASGVVTPNIHERSILAETGRNQLVLDAFADGSSFICLQCGGLVSVNRKDEHFTYWCS N

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47830			unknown protein		Lus10024804 [exp]	0	1
AT5G41020	MYB		myb family transcription facto...		Lus10022926 [exp]	2.0	0.8325
					Lus10029150 [exp]	8.1	0.7899
AT5G49120			Protein of unknown function (D...		Lus10006499 [exp]	11.7	0.7865
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10011053 [exp]	12.4	0.7671
AT4G28230			unknown protein		Lus10033724 [exp]	15.5	0.7792
AT5G10550		GTE2	global transcription factor gr...		Lus10020471 [exp]	17.6	0.7673
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Lus10023159 [exp]	19.5	0.7576
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10011016 [exp]	21.2	0.7871
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Lus10014164 [exp]	21.9	0.7217
AT1G64700			unknown protein		Lus10001663 [exp]	22.6	0.7681

Compare expression of checked genes

Lus10024804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.