Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47820 1546 / 0 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G50240 1216 / 0 KICP-02 ATP binding microtubule motor family protein (.1) AT5G60930 873 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G36200 240 / 1e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G45850 235 / 9e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 233 / 6e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G37420 232 / 8e-63 ATP binding microtubule motor family protein (.1) AT3G44050 231 / 6e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G19050 226 / 6e-60 POK2 phragmoplast orienting kinesin 2 (.1) AT3G63480 213 / 8e-60 ATP binding microtubule motor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018731 [exp] 2056 / 0 AT5G47820 1600 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10010047 [exp] 1740 / 0 AT5G47820 1569 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10000392 [exp] 909 / 0 AT5G60930 1483 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000762 [exp] 698 / 0 AT5G60930 1498 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025304 [exp] 238 / 7e-65 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10024429 [exp] 239 / 2e-64 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10018120 [exp] 237 / 3e-64 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10009073 [exp] 236 / 5e-64 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 236 / 7e-64 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G024700 [exp] 1727 / 0 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G123500 [exp] 1714 / 0 AT5G47820 1639 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G046700 [exp] 1437 / 0 AT5G47820 1422 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G150800 [exp] 881 / 0 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G106000 [exp] 878 / 0 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G233700 [exp] 239 / 4e-65 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 236 / 5e-64 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G210700 [exp] 234 / 1e-63 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G077800 [exp] 234 / 1e-63 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G082400 [exp] 234 / 2e-63 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10024805 pacid=23178923 polypeptide=Lus10024805 locus=Lus10024805.g ID=Lus10024805.BGIv1.0 annot-version=v1.0 ATGGATACTCCTCCACCGTCTCCCGGCGCCGGTGCCGGTGCTGGGGGAGAGAATTGCTGTGTAAAAGTAGCCGTACATGTAAGACCCCTAATTGCCGACG AAAGAGCTCAAGGCTGTAAAGATTGCGTCACTGTCGTCCCTGGAAAACCTCAGGTACAAATAGGGACGCACTCGTTTACCTTCGATCATGTATATGGGAG CACAGCTTCACCATCCTCTGCTATGTTTGAGGAATGTGTTTCTCCACTTGTTGATGGCTTGTTCCAAGGTTACAATGCAACAGTTCTCGCCTATGGTCAG ACAGGGTCGGGAAAGACTTATACAATGGGTACTGGTTTCAAAGATGGTTATCAAGCTGGAATAATTCCTCAAGTTATGAGTGTTCTCTTTGGAAAGATCG ACACTTTGAAGCATCAAACTGAATTCCAGCTTCATGTTTCTTTCATTGAGATTCTGAAAGAGGAAGTGCGAGACTTGCTTGATTCCGCTTTACTGAACAA AATGGAATCTGGAAATGGGAATGCTGGCAAAGTGCACGTTCCTGGAAAACCGCCGATACAGATTCGTGAATCGTCAAATGGTGTGATCACATTAGCAGGA TCCACGGAGGTTAGTGTAAGCAGTTTTAAGGAAATGGCTGCTTACCTAGAGCAGGGATCAATGAGCAGGGCAACAGGGAGTACAAACATGAACAACCAAT CTAGTCGCTCCCATGCCATTTTCACCATCACCCTAGAGCAGATACACAAACTCAATCCAATGTTTCCTGGAGATGGGTTTCCTAATGACAGCATGAATGA TGAGTATCTTTGTGCTAAATTGCATTTAGTAGATCTTGCTGGATCAGAGAGGGCTAAGAGGACTGGTTCTGATGGTTTGCGTTTCAAGGAAGGCATTCAC ATAAACAAGGGCCTTCTGGCACTTGGCAATGTTATCAGTGCACTTGGCGATGAGAAAAAGCGTAAAGAAGGTCTTCATGTTCCTTATCGGGACAGTAAAT TGACCCGCCTTTTGCAGGCGAGTATTCATACCCTAGGCATCCTGGTTTCTCTTCGTGCTTTCGACTCACTTGGCGGTAACAGCAGAACCGTCATGATAGC TTGCATTAGCCCTGCAGATATAAATGCTGAGGAAACCCTTAATACTCTGAAATATGCAAATCGTGCCCGAAATATTCAAAACAAGCCTGTTGTCAATAGA GATCCTATGTCCAGTGAGATGCTCAAAATGCGACAACAACTCGAGTATCTTCAGGCAGAACTTTGTGCCCGTGGTGGATCCTCACCTGTTGAAGTTCAGG TTCTCAAAGAAAGAATTGCTTGGCTAGAAGCTACGAATGAGGACCTTTGTAGAAAGCTTCATGAATACCGCAGCAGGTGTGCTCCTGGGGACCTGCGTGA AATAGATGCTCAAGATAGTAGTATCTGTTCTATAAAAGGTGAAGCAGTTAGAAGGAGCTTACATAGTCTAGAGGCATCTGACTATCAAATGGTTGAAACA ATATCAGCTCATACCAAGGAAATTGATGAAGAAGTAGCAAAAGAATGGGAGCACACACTTCTCCAGAACACACTAGACAAGGAGCTACATGAGTTAAACA GACGCTTGGAAGAGAAAGAGTCAGAGATGAAACTTGTTGGGGGATCTGACACTGCAGCACTTAAGCAACACTTCGGCAAGAAACTCATGGAATTAGAGGA TGAAAAAAGAGTTGTGCAGCAAGAACGTGATCGTTTGTTAGCCGAAATTGAAAACCTATCGGCTAACTCAGATGGGCAGACACAGAAATTGCAAGATGTG CATGCCCAGAAACTGAAGACATTAGAAGGGCAGATTCTGGATCTTAAGAAGAAACAGGAGAACCAAGTTCAGCTTTTGAAGCAAAAGCAAAAAAGTGACG AAGCAGCAAGGAAATTGCAAGAAGAAATACAATCTATAAAAGCTCAAAAGGTTCAACTGCAACACAGAATGAAGCATGAGGCAGAACAATTTCGACAATG GAAGGCCTCTAGAGAAAAGGAATTGCTTCAGTTACGCAAAGAGGGGAGAAGAAACGAATACGAAAGGCACAAGTTACAAGCCATAAACCAGCGCCAAAAA ATGGTTCTGCAGAGAAAAACAGAAGAAGCTGCTGTTGCTACCAAAAGGCTGAAGGAGTTACTCGAAGGTCGAAAATCTTCACCACGGGATAGCACAGGAC TTGCAAATGGACATGTAGCCAATGGGCAGAGTAATGAGAAATCCTTGCAGCGATGGCTTGAGCATGAGCTAGAAGTGATGGTGAATGTCCATGAAGTTCG GTTTGAATATGAGAAGCAGAGTCAAGTGAGAGCTGCTCTAGGGGAAGAACTTGCTGTGTTGAAGGAAGTGGATGAGCTAGCTTCAAAAGGATTAAGCCCT CCAAAGGGGAAGAATGGATTTTCCAGGGCTTCTTCCATGTCACCAAATGCCAGAATGGCCAGAATAGCATCGCTGGAGAACATGTTAAACATATCATCCA ACTCGCTTGTGGCAATGGCTTCGCAACTTTCAGAGGCAGAGGAACGTGAACGTGGTTTGACTACCCGTGGGCGTTGGAACCAATTGCGCTCCATGGGAGA TGCAAAGAACTTGCTTCAGTATATGTTTAACTCTCTTGGAGATGCAAGGTGCCAATGCTGGGAGAAGGATATGGAAATCAAGGAAATGAAGGAACAATTC AAAGAACTTGTGAACCTATTACGACAAAGTGAGACTCGAAGAAAGGAAGTCGAGAAGGAGCTGATACATAGAGAGGAAGCTATTGCTATTGCCTTGGCTA CAGCAGCTTCGGCTGGTCATGAACAAGGGAACTCACCCAATTCACTAAAACACAGTGCTGATGAAATGATGAGCAGTCCCTTGTCTCCGGTGTCTGTGCC AGCACAGAAGCAGCTGAAATATACGCCAGGGATCGTCAATGCCCCAATCACAGAAGCTGCGGCATTTATAGATCAGTCGAGAAAAATGGTGCCACTTGGG GACGCATCAATGAGAAAATTAGCAATTGCAGGACAAAATGGGAAGCTATGGAGATGGAAGAGAAGCCACCACCAGTGGCTTTTGCAATTTAAATGGAAAT GGCAGAAGCCATGGAGGATCTCTGAGACGATCAGGCTTAACGATGTAACAATTTCAAGGACAAGGCCTCGTGTACAGTATCGAGCACGAGTGTCATGA
AA sequence Show only first row Show all	>Lus10024805 pacid=23178923 polypeptide=Lus10024805 locus=Lus10024805.g ID=Lus10024805.BGIv1.0 annot-version=v1.0 MDTPPPSPGAGAGAGGENCCVKVAVHVRPLIADERAQGCKDCVTVVPGKPQVQIGTHSFTFDHVYGSTASPSSAMFEECVSPLVDGLFQGYNATVLAYGQ TGSGKTYTMGTGFKDGYQAGIIPQVMSVLFGKIDTLKHQTEFQLHVSFIEILKEEVRDLLDSALLNKMESGNGNAGKVHVPGKPPIQIRESSNGVITLAG STEVSVSSFKEMAAYLEQGSMSRATGSTNMNNQSSRSHAIFTITLEQIHKLNPMFPGDGFPNDSMNDEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGIH INKGLLALGNVISALGDEKKRKEGLHVPYRDSKLTRLLQASIHTLGILVSLRAFDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPVVNR DPMSSEMLKMRQQLEYLQAELCARGGSSPVEVQVLKERIAWLEATNEDLCRKLHEYRSRCAPGDLREIDAQDSSICSIKGEAVRRSLHSLEASDYQMVET ISAHTKEIDEEVAKEWEHTLLQNTLDKELHELNRRLEEKESEMKLVGGSDTAALKQHFGKKLMELEDEKRVVQQERDRLLAEIENLSANSDGQTQKLQDV HAQKLKTLEGQILDLKKKQENQVQLLKQKQKSDEAARKLQEEIQSIKAQKVQLQHRMKHEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQAINQRQK MVLQRKTEEAAVATKRLKELLEGRKSSPRDSTGLANGHVANGQSNEKSLQRWLEHELEVMVNVHEVRFEYEKQSQVRAALGEELAVLKEVDELASKGLSP PKGKNGFSRASSMSPNARMARIASLENMLNISSNSLVAMASQLSEAEERERGLTTRGRWNQLRSMGDAKNLLQYMFNSLGDARCQCWEKDMEIKEMKEQF KELVNLLRQSETRRKEVEKELIHREEAIAIALATAASAGHEQGNSPNSLKHSADEMMSSPLSPVSVPAQKQLKYTPGIVNAPITEAAAFIDQSRKMVPLG DASMRKLAIAGQNGKLWRWKRSHHQWLLQFKWKWQKPWRISETIRLNDVTISRTRPRVQYRARVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10024805 [exp]	0	1
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10018731 [exp]	1.0	0.9655
AT4G13710			Pectin lyase-like superfamily ...		Lus10011758 [exp]	4.0	0.8774
AT3G45850			P-loop containing nucleoside t...		Lus10018120 [exp]	4.0	0.8950
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10008190 [exp]	4.7	0.8623
AT4G39050			Kinesin motor family protein (...		Lus10017496 [exp]	6.5	0.8690
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10001851 [exp]	9.2	0.8685
AT2G32850			Protein kinase superfamily pro...		Lus10037472 [exp]	10.1	0.8333
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10006161 [exp]	12.4	0.8660
AT1G66830			Leucine-rich repeat protein ki...		Lus10033569 [exp]	13.2	0.8433
AT5G66330			Leucine-rich repeat (LRR) fami...		Lus10028359 [exp]	13.3	0.8502

Compare expression of checked genes

Lus10024805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.