Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G06536 45 / 1e-05 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018730 [exp] 275 / 2e-92 AT4G06536 173 / 2e-53 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) Lus10010045 [exp] 159 / 4e-46 AT4G06536 149 / 6e-43 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) Lus10010241 [exp] 123 / 2e-33 AT4G06536 140 / 1e-40 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G025000 [exp] 171 / 5e-51 AT4G06536 173 / 6e-52 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) Potri.002G123800 [exp] 170 / 1e-50 AT4G06536 174 / 3e-52 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024806 pacid=23178913 polypeptide=Lus10024806 locus=Lus10024806.g ID=Lus10024806.BGIv1.0 annot-version=v1.0 ATGCAAAGGATACGATTAAATTCAGGGCTAAAGAGAGTTAGCGTTACCAATCCTTCGACATCGGCCGCCTCCGTTATCAAAACCGCTCTTCCCTTACCCG GCCCGCCGTTGGGGAACAACATTAACTCGGCGTTTCCTCAGGAAGCCTACTTCGAGATCTCGATTTTGTACTCCCGCGGCGGAGGAGGTGAGGAGTACCA TCAGAATAGTCGTAGGTCCTCTTCTTCTTCGGCGGCGGCTGGTGAGAAGATTAAACTAATTCAGGAATTTCCAAATCAGAATTCAAACTCGGCGGCGCTG GTGCACGTCAGCAGCAGCCATAGGATCAATAGGATTGAAGAGCTGAAGGGCAGTGGTAAAGATGATAGCAGTAAGAGGAGTGAAGCTGTTTCGGTGGCGG TGGGGCTCTCGGTTGGTAGCGGCTGTCCACCGTTCAAGCTCCCTGGAAGCTACCAGGGTTCCATTGGCTTCAATTCCACTGGCTCTGTCTATCTTGATGG TCTGAAGCTGGTGTTTGAAACTGAGGCATCATCAGACTGGGCAAAGACAGAGAGAGTAATAGGGTGCGGGTTCGAGCCGAGGCAGAAGAAAGTCAGTGTG GCGGAAAGAAGCCCCCCCGCTACACAATTCCCCCCCCCCCCCCCACCACAACAACAACAACGACGATAG
AA sequence Show only first row Show all	>Lus10024806 pacid=23178913 polypeptide=Lus10024806 locus=Lus10024806.g ID=Lus10024806.BGIv1.0 annot-version=v1.0 MQRIRLNSGLKRVSVTNPSTSAASVIKTALPLPGPPLGNNINSAFPQEAYFEISILYSRGGGGEEYHQNSRRSSSSSAAAGEKIKLIQEFPNQNSNSAAL VHVSSSHRINRIEELKGSGKDDSSKRSEAVSVAVGLSVGSGCPPFKLPGSYQGSIGFNSTGSVYLDGLKLVFETEASSDWAKTERVIGCGFEPRQKKVSV AERSPPATQFPPPPPPQQQQRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G06534			unknown protein		Lus10024806 [exp]	0	1
AT5G23160			unknown protein		Lus10017395 [exp]	2.6	0.9668
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033743 [exp]	5.5	0.9602
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10015188 [exp]	6.2	0.9517
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031660 [exp]	7.7	0.9472
AT4G35160			O-methyltransferase family pro...		Lus10015311 [exp]	8.7	0.9484
AT2G14440			Leucine-rich repeat protein ki...		Lus10041860 [exp]	9.9	0.9458
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10042316 [exp]	11.8	0.9382
AT4G27290			S-locus lectin protein kinase ...		Lus10038552 [exp]	13.6	0.9465
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021102 [exp]	15.5	0.9444
AT4G27290			S-locus lectin protein kinase ...		Lus10014811 [exp]	16.2	0.9411

Compare expression of checked genes

Lus10024806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.