Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52010 388 / 4e-133 C2H2ZnF C2H2-like zinc finger protein (.1) AT4G12240 189 / 3e-56 C2H2ZnF zinc finger (C2H2 type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018728 [exp] 451 / 2e-159 AT5G52010 375 / 5e-130 C2H2-like zinc finger protein (.1) Lus10018729 [exp] 241 / 2e-78 AT5G52010 136 / 2e-38 C2H2-like zinc finger protein (.1) Lus10032208 [exp] 185 / 2e-54 AT4G12240 402 / 5e-140 zinc finger (C2H2 type) family protein (.1) Lus10024570 [exp] 82 / 7e-18 AT4G12240 234 / 3e-76 zinc finger (C2H2 type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G025100 [exp] 429 / 7e-149 AT5G52010 441 / 5e-154 C2H2-like zinc finger protein (.1) Potri.003G114700 [exp] 189 / 1e-55 AT4G12240 424 / 5e-148 zinc finger (C2H2 type) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024807 pacid=23178987 polypeptide=Lus10024807 locus=Lus10024807.g ID=Lus10024807.BGIv1.0 annot-version=v1.0 ATGTCTCCACTTCTCACCTCCGTCGACACCTCTCATCTGCTGAAACCACAGATTCTCTTCTCACAAACCTCTCTCCATTCCTCTCATTCATTCTCCCCCG CAAATCCAGACCGTCAATTCAAATTCAACGGACTGATTCTTCAGAGTCCAAGGTCTTATCTCCGCCGTAGATGTCCGATAACCGCCTGCTACGCTTCCGC CTCCGCCTCTGCCGCCGCAGAGTCGGAGATCAACATGGTAAAGAACAAGCAAGGAACGTACACCGCCAGGCAGAACAAAGTGGTGGTTCTGTGGGATCTC GACAACAAGCCGCCGCGTGGGCCGCCTTACAACGCTGCTTTAGCGCTGAAGGAAATGGCGGAGAATTTCGGAGAGGTAATCGAGATGTCGGCTTATGCCA ACCGTCACGCCTTCGTCCACCTCCCACAGTGGGTGGTGGAGGACCGGCGGGAAAAGAGGCAGCAGGACATCCTGGAACGGAAAGGAATCGTCTCGTCAAC TGAACCCTATGTATGCGGGGTGTGCGGCAGGAAATGCAAGACCAATTTGGACCTGAAGAAGCACTTCCGGCAGCTCCACGAGCGGGAAAGGCAGAAGAAG GTGAACCGAATGAAATCCCAAAAGGGGAAGAAACGGCAGAAGAACAAAGAGAGGTTCATATCAGGGAATGAGAAGTATAACAACGAAGCTAGGAGATTGT TGACTCCGAAAGTAGGGTACGGGCTAGCTGCGGAGTTGAGGAGAGCTGGGGTGTATGTTAAGATGGTGGAAGATAAGCCTCAAGCTGCGGATTGGGCAGT GAAGAAACAAATAGAGCATTCGATGAGCAGGGGGGTTGATTGGGTAGTTCTAGTGTCGGATGATTCAGATTTCAGAGGGATATTGATGAGAGCTAGGGAG TCTAGTTTGGGTACGGTGGTTGTTGGTGATAGGGATAGAGCATTGGGAAAGCACGCTGATTTGTGGGTTCCCTGGATTGGGGTTGAGAATGGAGATGTAA GTGAGCAAGATTTGGTGCCTAAGAGAAGAACAAGTGAGGATTCGGATTCGGATTCGGATGATGAGTTTGAGTGTGATTCTGTTAGTCATTTTGCAGAAGA AGATGTTGGGTATTATGAGTGGAGTGATGTGGGTACTGTTGTTGAGGAGCTTACAGGAAGGAGGAGGATTTCAATTTTCTCGGAAGAGGAAGAGGAAGAA GACGGTGACTATGAGCTGTGGGATAGTGACGATGAAGATGATAGCTTTTTGCATCACATTTGA
AA sequence Show only first row Show all	>Lus10024807 pacid=23178987 polypeptide=Lus10024807 locus=Lus10024807.g ID=Lus10024807.BGIv1.0 annot-version=v1.0 MSPLLTSVDTSHLLKPQILFSQTSLHSSHSFSPANPDRQFKFNGLILQSPRSYLRRRCPITACYASASASAAAESEINMVKNKQGTYTARQNKVVVLWDL DNKPPRGPPYNAALALKEMAENFGEVIEMSAYANRHAFVHLPQWVVEDRREKRQQDILERKGIVSSTEPYVCGVCGRKCKTNLDLKKHFRQLHERERQKK VNRMKSQKGKKRQKNKERFISGNEKYNNEARRLLTPKVGYGLAAELRRAGVYVKMVEDKPQAADWAVKKQIEHSMSRGVDWVVLVSDDSDFRGILMRARE SSLGTVVVGDRDRALGKHADLWVPWIGVENGDVSEQDLVPKRRTSEDSDSDSDDEFECDSVSHFAEEDVGYYEWSDVGTVVEELTGRRRISIFSEEEEEE DGDYELWDSDDEDDSFLHHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52010	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10024807 [exp]	0	1
AT5G18660		PCB2, DVR	PALE-GREEN AND CHLOROPHYLL B R...		Lus10037912 [exp]	8.9	0.8505
AT5G01650			Tautomerase/MIF superfamily pr...		Lus10022681 [exp]	11.3	0.7986
AT5G44000			Glutathione S-transferase fami...		Lus10027233 [exp]	13.0	0.8170
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10016803 [exp]	17.7	0.8130
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Lus10010557 [exp]	18.4	0.8203
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020418 [exp]	19.4	0.8202
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10037013 [exp]	19.7	0.8158
AT2G38270		ATGRX2, CXIP2	GLUTAREDOXIN, CAX-interacting ...		Lus10002847 [exp]	23.5	0.8193
AT1G28150			unknown protein		Lus10030561 [exp]	25.5	0.7568
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10003874 [exp]	26.3	0.7092

Compare expression of checked genes

Lus10024807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.