Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42830 441 / 2e-152 HXXXD-type acyl-transferase family protein (.1) AT5G07850 424 / 1e-145 HXXXD-type acyl-transferase family protein (.1) AT5G07870 385 / 4e-130 HXXXD-type acyl-transferase family protein (.1) AT5G07860 377 / 6e-127 HXXXD-type acyl-transferase family protein (.1) AT2G39980 263 / 3e-82 HXXXD-type acyl-transferase family protein (.1) AT5G67150 236 / 2e-72 HXXXD-type acyl-transferase family protein (.1) AT5G01210 235 / 8e-72 HXXXD-type acyl-transferase family protein (.1) AT3G50280 206 / 4e-61 HXXXD-type acyl-transferase family protein (.1) AT3G50300 199 / 2e-58 HXXXD-type acyl-transferase family protein (.1) AT3G50270 196 / 4e-57 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028267 [exp] 229 / 2e-69 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10040222 [exp] 224 / 3e-67 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10031149 [exp] 218 / 2e-65 AT3G50280 305 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Lus10031148 [exp] 213 / 2e-63 AT5G67150 284 / 5e-91 HXXXD-type acyl-transferase family protein (.1) Lus10041591 [exp] 206 / 2e-60 AT5G67150 347 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10035519 [exp] 191 / 1e-55 AT5G01210 520 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10027779 [exp] 153 / 2e-42 AT5G01210 350 / 7e-119 HXXXD-type acyl-transferase family protein (.1) Lus10026686 [exp] 145 / 1e-41 AT5G42830 125 / 7e-35 HXXXD-type acyl-transferase family protein (.1) Lus10027500 [exp] 153 / 3e-41 AT5G23940 571 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G025600 [exp] 504 / 8e-177 AT5G42830 565 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025550 [exp] 503 / 1e-176 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025500 [exp] 502 / 5e-176 AT5G42830 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.008G065000 [exp] 265 / 5e-83 AT2G39980 705 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G097500 [exp] 258 / 1e-80 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.010G192400 [exp] 257 / 4e-80 AT2G39980 708 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.016G112400 [exp] 256 / 6e-80 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057100 [exp] 249 / 1e-77 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) Potri.003G057001 [exp] 249 / 2e-77 AT5G67150 275 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Potri.003G057200 [exp] 248 / 5e-77 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10024809 pacid=23178901 polypeptide=Lus10024809 locus=Lus10024809.g ID=Lus10024809.BGIv1.0 annot-version=v1.0 ATGGAGTCTCCGACCGTCCAACACATATCGGAGTGGTTCGTCAGGCCACACCGTTCCACGGATGAAATGCACCGTCCGATGCATTTGCCACCGTGGGATC TCCTCATGCTCTCCGTCCATTACATCCAAAAGGGACTCCTCTACCCCAAACCACCCTCCGCCGCCGGCTTCAGCATCCTCCAATTCCTCAACCGCCTCAA CCACTCCCTCTCGCTCACCCTCTCTCACTTCTACCCTCTCGCCGGCCGCCTCGTCACGTCCAACAACCCTGACGGCTCCTACGTCGTCTCCTTGGACTGC CAAAACAGCCCCGGAGCTCGATTGGTCCACGCGGCGGCCGACTTGTCGATTTCCGATGTTCTGTCGCCGACTTATGTCCCGGCTGTGGTCCAATCCTTCT TCGACCACGACCGGGCCATCAATCACGAAGGTCACACAAAATCCCTCCTCACCATCCAAGTCACCGAGCTCGTCGACGGCGTATTCGTCGGCTTTTCGTT CAACCACGCCGTCGGCGACGGCACGTCCTTCTGGAATTTCTTAACTGCATTGTCCGAAACGTTTCAATCGGAGGGTCAAGTCCCTATCTCCCGTCCACCG GTAATCAAGCGGTGGTTCCCCGAGGGCCACGGGCCAATAATTCCACTCCCGGCGGATCAAATCCCTAGCCGATACGAGTCCCCAAAACTCAAGGAGCGAT TCTTCCACTTCTCGTCAGAATCGATTTCGATGCTAAAATCGAAAGCGAATTCACAATCCCTAACCACCAAGATCTCATCATTTCAATCATTAATCGATTT CGATGCTAAAATCGAAAGCGAATTCACAATCCCTAACCACCAAGATCTCATCATTTCAATCATTGTCCGCATTAGTCTGGCGGTGCATAACCAGGGCCCG CAATTTCCCGCCGGAGAGAGTGACCGGGTGCCGATTGGCGACCAACAACAGGGGAAGGATGAACCCTCCATTGGATCCGAACTATTTCGGAAATTCAATC AGTCCGATGCGGACATCCGTTACGGGAGGGGGCCACCCGTTACGGCGGGGGAGCTGCTTGAGAACGACCTTGGATGGGCGGCGTGGCGGCTACATCTGGC AGTGGCGGGACACGGGGATGAGAAGATCCGGGGAGGGTTAGTGTCGTGGTTGGAGTCGCCGGTGGTGTATAAGTTGGAGCAGGTGTTCGATCCTGACAGT GTGATGATGGGGAGCTCGCCGAGGTTCAACAAGTACGGGATCGAGTTTGGGTTGGGGAAAGCGTTAGCGCTGAGGAGTGGGTATGCGAACAAATTCAGCG GGAAAGTGTCGGCGTACCCTGGTAGGGATGGCGGTGGGAGTATTGATTTGGAGATTTGCCTTCCGCCGGAGACCATGGCTGCTTTCGAATCTGATCAAGA GTTCATGAGCTGCGTCTCTTTTGGAATCAGAGACTGA
AA sequence Show only first row Show all	>Lus10024809 pacid=23178901 polypeptide=Lus10024809 locus=Lus10024809.g ID=Lus10024809.BGIv1.0 annot-version=v1.0 MESPTVQHISEWFVRPHRSTDEMHRPMHLPPWDLLMLSVHYIQKGLLYPKPPSAAGFSILQFLNRLNHSLSLTLSHFYPLAGRLVTSNNPDGSYVVSLDC QNSPGARLVHAAADLSISDVLSPTYVPAVVQSFFDHDRAINHEGHTKSLLTIQVTELVDGVFVGFSFNHAVGDGTSFWNFLTALSETFQSEGQVPISRPP VIKRWFPEGHGPIIPLPADQIPSRYESPKLKERFFHFSSESISMLKSKANSQSLTTKISSFQSLIDFDAKIESEFTIPNHQDLIISIIVRISLAVHNQGP QFPAGESDRVPIGDQQQGKDEPSIGSELFRKFNQSDADIRYGRGPPVTAGELLENDLGWAAWRLHLAVAGHGDEKIRGGLVSWLESPVVYKLEQVFDPDS VMMGSSPRFNKYGIEFGLGKALALRSGYANKFSGKVSAYPGRDGGGSIDLEICLPPETMAAFESDQEFMSCVSFGIRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	0	1
AT1G66160		ATCMPG1	"CYS, MET, PRO, and GLY protei...		Lus10040124 [exp]	1.4	0.9961
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10028509 [exp]	1.4	0.9946
AT1G78780			pathogenesis-related family pr...		Lus10029763 [exp]	2.2	0.9910
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001276 [exp]	3.7	0.9902
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10020023 [exp]	4.0	0.9928
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10018730 [exp]	4.0	0.9880
AT3G02840			ARM repeat superfamily protein...		Lus10040125 [exp]	5.2	0.9944
AT4G35180		LHT7	LYS/HIS transporter 7 (.1)		Lus10022642 [exp]	6.8	0.9860
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10017703 [exp]	6.9	0.9893
					Lus10040445 [exp]	7.4	0.9893

Compare expression of checked genes

Lus10024809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.