Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42940 254 / 7e-75 RING/U-box superfamily protein (.1) AT1G45180 220 / 1e-62 RING/U-box superfamily protein (.1) AT2G15530 137 / 1e-33 RING/U-box superfamily protein (.1.2.3.4) AT4G34040 124 / 2e-29 RING/U-box superfamily protein (.1) AT1G53190 94 / 3e-20 RING/U-box superfamily protein (.1.2) AT5G10650 87 / 8e-18 RING/U-box superfamily protein (.1.2) AT5G24870 86 / 2e-17 RING/U-box superfamily protein (.1.2) AT3G15070 82 / 3e-16 RING/U-box superfamily protein (.1.2) AT4G31450 79 / 4e-15 RING/U-box superfamily protein (.1) AT5G67120 75 / 1e-14 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018725 [exp] 823 / 0 AT5G42940 170 / 1e-45 RING/U-box superfamily protein (.1) Lus10010372 [exp] 730 / 0 AT5G42940 353 / 2e-112 RING/U-box superfamily protein (.1) Lus10010036 [exp] 728 / 0 AT5G42940 244 / 2e-71 RING/U-box superfamily protein (.1) Lus10042443 [exp] 82 / 6e-16 AT5G10650 242 / 2e-73 RING/U-box superfamily protein (.1.2) Lus10023507 [exp] 82 / 6e-16 AT2G37150 138 / 4e-35 RING/U-box superfamily protein (.1.2.3) Lus10020145 [exp] 81 / 1e-15 AT4G31450 224 / 4e-67 RING/U-box superfamily protein (.1) Lus10026226 [exp] 79 / 3e-15 AT5G10650 200 / 6e-58 RING/U-box superfamily protein (.1.2) Lus10040389 [exp] 79 / 4e-15 AT2G37150 191 / 1e-53 RING/U-box superfamily protein (.1.2.3) Lus10034644 [exp] 76 / 4e-15 AT1G17970 139 / 3e-39 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G124300 [exp] 582 / 0 AT5G42940 377 / 3e-121 RING/U-box superfamily protein (.1) Potri.009G100100 [exp] 236 / 5e-68 AT4G34040 392 / 5e-127 RING/U-box superfamily protein (.1) Potri.001G304900 [exp] 222 / 9e-63 AT4G34040 370 / 4e-118 RING/U-box superfamily protein (.1) Potri.005G139900 [exp] 107 / 6e-24 AT4G34040 160 / 1e-41 RING/U-box superfamily protein (.1) Potri.007G045500 [exp] 103 / 7e-23 AT4G34040 163 / 1e-42 RING/U-box superfamily protein (.1) Potri.001G373700 [exp] 96 / 2e-20 AT1G53190 354 / 1e-116 RING/U-box superfamily protein (.1.2) Potri.011G097100 [exp] 89 / 2e-18 AT1G53190 372 / 2e-123 RING/U-box superfamily protein (.1.2) Potri.006G274700 [exp] 84 / 1e-16 AT5G24870 263 / 4e-81 RING/U-box superfamily protein (.1.2) Potri.018G005600 [exp] 81 / 9e-16 AT5G24870 284 / 6e-89 RING/U-box superfamily protein (.1.2) Potri.010G220700 [exp] 72 / 6e-13 AT2G37150 180 / 6e-50 RING/U-box superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10024810 pacid=23178947 polypeptide=Lus10024810 locus=Lus10024810.g ID=Lus10024810.BGIv1.0 annot-version=v1.0 ATGCAAGGCCAGAGGGGTATAATTGGCTCCTTGCCGGAGACTTTGGACTTTGACCATGGATCAGCTTCAGGTAATGCTGTCATGGACCAGCAACTTTGCT GGAACAATCTGCGAAATCCAGCCGAAGAGCGATTGCCAAACTTCATGTTGTCCCCTGTTCACTCGAATACCTATGTGAATCCTGTTGATCATGAACGCCA GAACTTGAGTCGGTGGAGCCTAGGTGAGCCAAGTTCTCGTAATGCTAGAAGTGATAGGAATCGTGATAAGCAGAAAATGGAAAATGGATCATCATCCTCA GCAGGAGCAGGCATGCCTGCTGCTACTAGTTTAAGGTTAGAAGAGAGGCTTTCTGAACCGACACATACACTTTCATTGAATACTGTTGATGTCAATGCAC ATTTTGGGCACAGTTCCAATGCCAATGGATTTCCCCAGAATCTAAACTTGAATGCAGATTTTGTCGGCCAAGGTGATGATCCTTGTCAAGTTATAGGAGA CAATAACATGTACAAGTCTAGTGGAGCAGAATATGTGTGTGCTCCTCCTGTTACTGGTCCAGAAGATTTCCTCCTGTCCTCTGGAAATGGTGGATACTTT AGGGAAGACGAAAGTAGACCTGGTTGTTCTTTGGATGGGCGTCGTCAATCATGCAAAAGAAAAGCTGTGGAAGGACATGGCCAGTCCTCTATGAATGCTA GTTCTAGCTTGTTTCAGCATCCAGAGGGTAGTGCATGGGCCGGTGTACCTCCTCGTGGGGTTGGCAGAAGTTTGAGTATATCAGCTCCACCTGAGCAGGT GAATCCTAGACTTGGATTAGGTTTGAGAAGACTAGGTACTGAAGGTAATGCTGAACCCATGGCATCTGGAAGCTCTCGGAGAAACTTCCGTTTGAGGATA CATCCTTCACATCAAGAATCTGTTCCTTCTTCATTATTTTCTTCTGGAACTGCTGTTAGGAATAACAATTTCCAATCTTCCCATCACTCAAGGCGTATTC CAGTTGATCAGTCCTTGGAGTTTATGTCAGCATTAACTGCAGACGTGTCACTCCCTCAAACTCAGCCAGCTGTTATTCCTGTTCCGGCTTTGCCACAAAA TGCGCGACCATTTAGGTGGAGTGAAAGCTCCAGCTCCAGCTCAAGACCTGGTAGCTCATCAGGTCCTATAGATTTGGCTGAGGGTGAGGAGGGAGGCTCA AGAAGTAGCATTAGACCACATTTATGGGAACATCCTATGTTTGTACCTGCAACAGAGTTGAGAACTTCTGCTAGGAATCCAACAAGTAGGAATGTGGTTG GTGGGAGTATGGGAGTTCCAGGCAGTGTTTCTGCTGCATCTCGGAGCGGCTCAAATTCAGGTGTTAATTTGTCAGCTCCAACTTGGGTTCCTCATCAAAA TACTTCTAGAAACTCAAGGCGACTGGCTGAGTATGTTCGTCGGTCGATGTTTGCTTCTGCTGGCAGTGAGCCTGGAGTTCAGAACGGTAATCATCCTTAT GCTGAAGAGATGGTTGCACCATCTGGAACAAGTAACCAGGCCCATCATCGATCTCACCCAAGATCGGCAGCATCTGTAGACAGACAGGGTGATGGTGTAC TTAGAATCCCTTATCCATTACGAAACTTTAGTGCTTCTGGTGAAGGTCGAAGCAGGCTTGTTTCTGAGCAAATACGGAATGTCTTGGATCTCATGCGTAG GGGCGAGGGCTTGCGAATTGAGGAGTTACTTGCGTTGGAAGAGAGGATTGGCAACGTCAACACTGGACTAAACGAAGAGACCATAGTTAATCGACTCAAG CAACGGACATATTCTGCTGGATTGGGAACATGCAACGCCGAGACAGAACCATGCTGCGTTTGCCAGGAGGAGTACAGCGATGGTGAGAGGATTGGAACCC TAGATTGTGGGCATGATTTTCACATGGATTGCATCAAGCAATGGCTGATGCTGAAGAATTGGTGCCCTATATGTAAAACCACAGGGCTGGCTTCCAAATA A
AA sequence Show only first row Show all	>Lus10024810 pacid=23178947 polypeptide=Lus10024810 locus=Lus10024810.g ID=Lus10024810.BGIv1.0 annot-version=v1.0 MQGQRGIIGSLPETLDFDHGSASGNAVMDQQLCWNNLRNPAEERLPNFMLSPVHSNTYVNPVDHERQNLSRWSLGEPSSRNARSDRNRDKQKMENGSSSS AGAGMPAATSLRLEERLSEPTHTLSLNTVDVNAHFGHSSNANGFPQNLNLNADFVGQGDDPCQVIGDNNMYKSSGAEYVCAPPVTGPEDFLLSSGNGGYF REDESRPGCSLDGRRQSCKRKAVEGHGQSSMNASSSLFQHPEGSAWAGVPPRGVGRSLSISAPPEQVNPRLGLGLRRLGTEGNAEPMASGSSRRNFRLRI HPSHQESVPSSLFSSGTAVRNNNFQSSHHSRRIPVDQSLEFMSALTADVSLPQTQPAVIPVPALPQNARPFRWSESSSSSSRPGSSSGPIDLAEGEEGGS RSSIRPHLWEHPMFVPATELRTSARNPTSRNVVGGSMGVPGSVSAASRSGSNSGVNLSAPTWVPHQNTSRNSRRLAEYVRRSMFASAGSEPGVQNGNHPY AEEMVAPSGTSNQAHHRSHPRSAASVDRQGDGVLRIPYPLRNFSASGEGRSRLVSEQIRNVLDLMRRGEGLRIEELLALEERIGNVNTGLNEETIVNRLK QRTYSAGLGTCNAETEPCCVCQEEYSDGERIGTLDCGHDFHMDCIKQWLMLKNWCPICKTTGLASK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42940			RING/U-box superfamily protein...		Lus10024810 [exp]	0	1
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10025239 [exp]	1.7	0.8512
AT4G23460			Adaptin family protein (.1)		Lus10017508 [exp]	2.4	0.8031
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10000743 [exp]	4.0	0.7869
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10037820 [exp]	5.7	0.8416
AT4G02480			AAA-type ATPase family protein...		Lus10010282 [exp]	6.7	0.8282
AT5G10370			helicase domain-containing pro...		Lus10023162 [exp]	9.2	0.7659
AT3G13670			Protein kinase family protein ...		Lus10013737 [exp]	9.5	0.7678
AT3G58750		CSY2	citrate synthase 2 (.1)		Lus10031384 [exp]	9.5	0.8073
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	9.6	0.8183
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Lus10038033 [exp]	9.8	0.7674

Compare expression of checked genes

Lus10024810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.