Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36930 146 / 1e-40 bHLH SPT, bHLH024 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67110 121 / 8e-33 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G09530 117 / 6e-29 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT2G20180 107 / 4e-26 bHLH PIF1, PIL5, bHLH015 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) AT4G00050 99 / 6e-23 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46970 99 / 6e-23 bHLH PIL1, bHLH124 phytochrome interacting factor 3-like 1 (.1) AT4G28790 94 / 5e-21 bHLH bHLH023 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G59060 94 / 5e-21 bHLH PIF5, PIL6 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4) AT2G43010 91 / 3e-20 bHLH SRL2, PIF4, AtPIF4 phytochrome interacting factor 4 (.1.2) AT4G28800 89 / 2e-19 bHLH bHLH056 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018724 [exp] 251 / 6e-83 AT4G36930 126 / 2e-34 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10022833 [exp] 118 / 3e-29 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10011899 [exp] 117 / 4e-29 AT2G20180 290 / 6e-92 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10029805 [exp] 112 / 1e-27 AT3G59060 163 / 7e-45 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4) Lus10020727 [exp] 111 / 1e-26 AT2G30800 1223 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10038020 [exp] 104 / 1e-24 AT4G36930 105 / 1e-24 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10009261 [exp] 102 / 5e-24 AT4G36930 102 / 7e-24 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10015734 [exp] 101 / 6e-24 AT4G00050 138 / 6e-37 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003471 [exp] 100 / 2e-23 AT4G00050 129 / 8e-34 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G124400 [exp] 229 / 3e-73 AT4G36930 154 / 6e-44 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G025800 [exp] 218 / 6e-69 AT4G36930 148 / 1e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G139700 [exp] 150 / 6e-42 AT4G36930 171 / 2e-49 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G001800 [exp] 122 / 2e-30 AT1G09530 247 / 3e-73 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.013G001300 [exp] 120 / 5e-30 AT1G09530 224 / 6e-65 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.002G252800 [exp] 118 / 3e-29 AT2G20180 222 / 7e-66 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Potri.014G111400 [exp] 111 / 5e-27 AT2G46970 131 / 3e-33 phytochrome interacting factor 3-like 1 (.1) Potri.002G055400 [exp] 111 / 5e-27 AT2G43010 177 / 6e-50 phytochrome interacting factor 4 (.1.2) Potri.005G207200 [exp] 109 / 2e-26 AT2G43010 171 / 1e-47 phytochrome interacting factor 4 (.1.2) Potri.002G143300 [exp] 107 / 1e-25 AT4G00050 278 / 2e-89 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10024811 pacid=23178848 polypeptide=Lus10024811 locus=Lus10024811.g ID=Lus10024811.BGIv1.0 annot-version=v1.0 ATGGCGAATCTGTACGGCGCAGCTCAGTCCCCAACTGCCGCCGACCCACCTCCGCCTCCCTCCGAGACCGAGGAAATCTCCTCCTTTCTCCACCAGTTCC TCCAAAACCAAAACGCTTCTTCCTCCACCTCCTCCTGCTCCGCCAAGTTCATGTTCCACCACCCTCACTTCTCGTCTCCGCCACCGCATCATCATCATCA GCAACACTTCCAACCTCACCAGGACGCCGCTTCCCCCCTCGACTTCCTGGATCGCCAACACCGTCTAGCCCACTCCAACCCCGACTGCCCGAACCCTGGC GTTAATTTCTCTGATCCCGGCCTCTACTTCTCGAAAGATGCTCTGGCTTCTGATAATGCCGCGGCCGCTGGCTCGAAAAGGAGAGGCGTTGCCGTGGAGG ACGATCTAGGTTCTGGCGGTGATTTCAGTTGCGACAGCGGGGGTGGAGAAGCGTCAGAGATGCCGACGGAGACAGTACGGCCTCGAGGGTCTTCAAAGCG GAGCAGAGCTGCAGAGGTTCATAATTTATCTGAAAAGAGGAGGAGAAGCAGGATCAACGAGAAAATGAAGGCTTTACAGAATCTAATTCCCAATTCTAAC AAGACGGATAAAGCATCGATGCTGGATGAAGCAATTGAATACTTGAAGCAGCTTCAGCTGCAAGTCCAGATGTTGACATTGAGGAATGGATTAAGCTTGC ATCCAATGTGCTTACCACCTGGAGTATTACAGCCTATGCAACTGCCTTTAACAGGATTGAGCTTTGAAGAAGGGAATAATAATGGACTGCTGACTAACAG CACATTAACAGCAGGCTCCTTTTCTGCAACTGAACAACCCCATCTCCAAACTGGTCATAACCTTCCTCATAATCAGTGTACAGTCTCGAATGGTCAACCT TCTGGAACAAACTTAACCGCTTCAGAGAACCCATTTGCCTTTGAACAACCTTATCAGGAAATCTGCAGGGAAGGCACAGCAGATAGAAAGCAGACAGTGA ATAACTCCTCACCAGGTGTTTCGTAG
AA sequence Show only first row Show all	>Lus10024811 pacid=23178848 polypeptide=Lus10024811 locus=Lus10024811.g ID=Lus10024811.BGIv1.0 annot-version=v1.0 MANLYGAAQSPTAADPPPPPSETEEISSFLHQFLQNQNASSSTSSCSAKFMFHHPHFSSPPPHHHHQQHFQPHQDAASPLDFLDRQHRLAHSNPDCPNPG VNFSDPGLYFSKDALASDNAAAAGSKRRGVAVEDDLGSGGDFSCDSGGGEASEMPTETVRPRGSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSN KTDKASMLDEAIEYLKQLQLQVQMLTLRNGLSLHPMCLPPGVLQPMQLPLTGLSFEEGNNNGLLTNSTLTAGSFSATEQPHLQTGHNLPHNQCTVSNGQP SGTNLTASENPFAFEQPYQEICREGTADRKQTVNNSSPGVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10024811 [exp]	0	1
AT5G06590			unknown protein		Lus10021091 [exp]	8.7	0.8506
AT2G17030			F-box family protein with a do...		Lus10021517 [exp]	10.9	0.8196
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10010104 [exp]	13.3	0.8575
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Lus10009236 [exp]	16.5	0.8432
AT4G25550			Cleavage/polyadenylation speci...		Lus10014987 [exp]	20.5	0.8115
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10012608 [exp]	25.5	0.8390
AT3G61700			Plant protein 1589 of unknown ...		Lus10019011 [exp]	25.8	0.8428
AT1G70350			unknown protein		Lus10030618 [exp]	30.8	0.8418
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Lus10019235 [exp]	31.9	0.8345
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10009670 [exp]	33.7	0.8403

Compare expression of checked genes

Lus10024811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.