Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49770 60 / 4e-10 bHLH ZOU, RGE1, bHLH095 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018723 [exp] 82 / 2e-19 AT1G49770 66 / 7e-14 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10002390 [exp] 63 / 3e-11 AT1G49770 128 / 7e-35 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G025900 [exp] 178 / 2e-54 AT1G49770 138 / 9e-39 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G305100 [exp] 120 / 2e-32 AT1G49770 180 / 1e-54 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10024812 pacid=23178942 polypeptide=Lus10024812 locus=Lus10024812.g ID=Lus10024812.BGIv1.0 annot-version=v1.0 ATGGAGGTGATGACCAAGTCGCGTAACTCGAGCTCGAATAGCCTGGTGGGTTGTATGGAACCAACTCCGACGACGACTACCGAGGAGACCAAGGTGGGCA AGAAGAGGAAGGCAGGTTCGTCTTCGAAGAATCAGGATGTCGGAGGGGATAATGATCAATCGGAGCAACAAGTTCATATATGGACGGAGAGGGAGAGGAG GAAGAGGATGAGGACTATGTTCACTAATCTCCAGGCCTTGCTTCCCCAACTTCCTTCCAAGGCAGACAAATCAAGCGTTGTTGATGAGGCAATAACATAC ATAAAGACCCTACAGCAGACACTCCAAACGCTAGAGAAGCAGAAGCTTGAAAAATTGCGAGGAGGAGGAATCATTATTGATTCCGAGCCCTCATCAGCAG TATCAGTGATCTCAGCATCAGAACCCACCAGGGAAGCATTTCTGGCATCTCAGGGACCTTCAAAGCTCTCAACTTCAAACACGACGAATGCACCATTAGC AGCAGCAGCAGCAGCTCCCTCTGGGTTTCAGACATGGTTTTCTCCGAATGTCGTGCTCAACATGTGCGGAGACGATGCCCATATATGTGTGTGTTCTGTG AAGAAGCAAGGCTTGTTTTCTACAATCTTACATATACTTGAGAAGCACAGTTTGGATGTTGTCTCTGTTCATGTCTCCACCCACCACCACAACCATTCGT GCACCTACATGATTCATGTCCAAGCAGGCGCAAGATGTAGCAGCCAGTTTCCAGAATCATTGTCTGCGGAGGATACATTCAAGCTAGCTGCTGGAGAAAT GAATTTGTGGCTCTTGTCCTGTTGA
AA sequence Show only first row Show all	>Lus10024812 pacid=23178942 polypeptide=Lus10024812 locus=Lus10024812.g ID=Lus10024812.BGIv1.0 annot-version=v1.0 MEVMTKSRNSSSNSLVGCMEPTPTTTTEETKVGKKRKAGSSSKNQDVGGDNDQSEQQVHIWTERERRKRMRTMFTNLQALLPQLPSKADKSSVVDEAITY IKTLQQTLQTLEKQKLEKLRGGGIIIDSEPSSAVSVISASEPTREAFLASQGPSKLSTSNTTNAPLAAAAAAPSGFQTWFSPNVVLNMCGDDAHICVCSV KKQGLFSTILHILEKHSLDVVSVHVSTHHHNHSCTYMIHVQAGARCSSQFPESLSAEDTFKLAAGEMNLWLLSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49770	bHLH	ZOU, RGE1, bHLH...	ZHOUPI, RETARDED GROWTH OF EMB...		Lus10024812 [exp]	0	1
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025409 [exp]	1.7	0.9333
AT1G49770	bHLH	ZOU, RGE1, bHLH...	ZHOUPI, RETARDED GROWTH OF EMB...		Lus10018723 [exp]	10.1	0.9398
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10037816 [exp]	10.9	0.9340
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10004225 [exp]	19.2	0.9322
					Lus10022751 [exp]	23.2	0.9066
AT5G65660			hydroxyproline-rich glycoprote...		Lus10028220 [exp]	23.8	0.9290
AT1G70840		MLP31	MLP-like protein 31 (.1)		Lus10020497 [exp]	25.8	0.9304
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10004677 [exp]	28.5	0.9189
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	28.9	0.9322
AT3G47570			Leucine-rich repeat protein ki...		Lus10033330 [exp]	32.6	0.9269

Compare expression of checked genes

Lus10024812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.