Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02630 551 / 0 Protein kinase superfamily protein (.1) AT1G01540 524 / 0 Protein kinase superfamily protein (.1.2) AT4G01330 520 / 0 Protein kinase superfamily protein (.1.2) AT4G34500 449 / 3e-155 Protein kinase superfamily protein (.1) AT3G59110 435 / 2e-148 Protein kinase superfamily protein (.1) AT2G42960 428 / 4e-146 Protein kinase superfamily protein (.1) AT3G17420 421 / 2e-143 GPK1 glyoxysomal protein kinase 1 (.1) AT1G56720 419 / 2e-142 Protein kinase superfamily protein (.1.2.3) AT5G18500 417 / 9e-142 Protein kinase superfamily protein (.1.2) AT1G09440 415 / 2e-141 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018722 [exp] 823 / 0 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10041593 [exp] 550 / 0 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012664 [exp] 505 / 2e-178 AT4G02630 511 / 0.0 Protein kinase superfamily protein (.1) Lus10007919 [exp] 499 / 4e-174 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036386 [exp] 492 / 3e-171 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10001423 [exp] 437 / 2e-149 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1) Lus10042324 [exp] 447 / 3e-148 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1) Lus10040459 [exp] 430 / 5e-148 AT4G34500 549 / 0.0 Protein kinase superfamily protein (.1) Lus10001055 [exp] 437 / 1e-147 AT3G59110 766 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G026100 [exp] 631 / 0 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.014G088800 [exp] 516 / 1e-180 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G139500 [exp] 496 / 2e-173 AT4G02630 477 / 2e-166 Protein kinase superfamily protein (.1) Potri.004G154000 [exp] 463 / 5e-160 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1) Potri.009G115600 [exp] 461 / 3e-159 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1) Potri.002G059000 [exp] 441 / 8e-151 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.005G203300 [exp] 437 / 3e-149 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.013G003700 [exp] 434 / 4e-148 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G003300 [exp] 431 / 5e-147 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G214200 [exp] 420 / 7e-143 AT5G18500 659 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10024813 pacid=23178873 polypeptide=Lus10024813 locus=Lus10024813.g ID=Lus10024813.BGIv1.0 annot-version=v1.0 ATGTCGAGCTCTTCGTCTCTGAACAATGAGCTATCGAAGAAGACATCAATTTTCGGGTTTCGATTATGGGTGGTGGTGGGTTTCGGCGTCGGAGCTGCTA TAGTGATTGTCCTCTTCCTAATCTCGCTCTGGCTCACATCAAAGCGCTACCGAAGGAGAAGAAGAAGGAAGAATGATATCCCTCACCTCCAATTCAAGTC GCCGTCTCCCATTAACAACAATCCGACAATCGCAAATGTCTCCAAGGAGATATCGGAGATCCGGGTTGACCCGACTCCTTCTGAGTCTGACCTCAAGCTT TTGAACCCGAACCCGGAAACGGAAACCGACCCTGTTCCTCGTCAGGACGAGCATCTGCATCAACATCAACATCACAGCCCTGTTTCCTCTGCTTCGAGGA ACAGAATTCAGTTCGAAATCGGTAAGGACCACCGGATTTCTTACCCGGAGAGGGCTGGTAGTAGCGGGTCGGGTCCTCGGTCTGGTGACCAGGGGAGTAG TGGAATGACGGTGCCAGAGGTTTCCCATTTGGGTTGGGGACATTGGTATACTCTGAGGGAGATGGAGTTGTCTACTAATGAGTTTGCTGACGAGAATGTG ATTGGGGAAGGTGGTTATGGGATTGTTTACCTTGGAGTTCTGGAGGATAAGACTACAGTTGCAGTTAAAAATCTGCTCAATAGCAGGGGTCAAGCTGAGA AGGAGTTCAAGGTTGAAGTGGAGGCAATTGGACGGGTACGGCATAAGAATTTGGTGAGATTGTTAGGTTATTGTGCTGAAGGTGCTCACAGGATGCTTGT TTATGAGTATGTTGATAATGGAAACTTAGAGCAATGGCTTCATGGTGAAGTTGGCCCCAGCAGCCCTCTCACATGGGAGATTCGGATGAATGTCATAATC GGAACTGCAAAAGGGCTAACTTACTTGCATGAAGGGCTTGAGCCGAAAGTGGTGCATCGTGATATCAAATCAAGCAACATTTTGCTTGATAAACAGTGGA ATCCAAAAGTTTCTGACTTTGGTTTGGCGAAACTTTTGGGATCAGAGAGTAGTTACGTCACCACAAGAGTGATGGGTACATTTGGGTATGTGGCTCCAGA GTATGCTAGTACGGGCATGTTAAATGAAAGAAGTGATGTGTACAGTTTTGGAATCCTTCTCATGGAAGTCATTTCCGGAAGAAACCCTGTCGATTACAGC CGCCCTCAGGGAGAGGTGAACCTTGTTGAATGGCTTAAGACGATGGTGACGAATCGAAATGCAGATGGAGTTTTGGATCCTAGGTTACCAGAGAAACCAT CTTCAAGAGCACTGAAACGCGCTCTTTTAGTAGCTCTCCGCTGCGTGGATCCAAATGCTCAAAAGAGGCCGAAGATGGGGCATGTGATCCATATGCTGGA GGCTGACGACTTCCCATTTCGAGATGATCGTAGGACAAGAAATGATAGGCCTGTAATGGAGTCCGGTGACAGCAGTGGGTACGAAAGCGGTGCCCCAAAA AACAGATCAGTGTGGAGAAAACCCGAACCGGAGGACCGGTAA
AA sequence Show only first row Show all	>Lus10024813 pacid=23178873 polypeptide=Lus10024813 locus=Lus10024813.g ID=Lus10024813.BGIv1.0 annot-version=v1.0 MSSSSSLNNELSKKTSIFGFRLWVVVGFGVGAAIVIVLFLISLWLTSKRYRRRRRRKNDIPHLQFKSPSPINNNPTIANVSKEISEIRVDPTPSESDLKL LNPNPETETDPVPRQDEHLHQHQHHSPVSSASRNRIQFEIGKDHRISYPERAGSSGSGPRSGDQGSSGMTVPEVSHLGWGHWYTLREMELSTNEFADENV IGEGGYGIVYLGVLEDKTTVAVKNLLNSRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGEVGPSSPLTWEIRMNVII GTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSESSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILLMEVISGRNPVDYS RPQGEVNLVEWLKTMVTNRNADGVLDPRLPEKPSSRALKRALLVALRCVDPNAQKRPKMGHVIHMLEADDFPFRDDRRTRNDRPVMESGDSSGYESGAPK NRSVWRKPEPEDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02630			Protein kinase superfamily pro...		Lus10024813 [exp]	0	1
AT2G35840			Sucrose-6F-phosphate phosphohy...		Lus10005654 [exp]	12.5	0.7494
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10027948 [exp]	30.0	0.7491
AT1G19690			NAD(P)-binding Rossmann-fold s...		Lus10024280 [exp]	34.2	0.7344
AT1G25290		ATRBL10	RHOMBOID-like protein 10 (.1.2...		Lus10022969 [exp]	39.4	0.7119
AT1G76860			Small nuclear ribonucleoprotei...		Lus10042341 [exp]	60.7	0.7228
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021136 [exp]	70.9	0.7204
AT3G08980			Peptidase S24/S26A/S26B/S26C f...		Lus10002492 [exp]	152.5	0.6866
AT3G49645			unknown protein		Lus10002833 [exp]	175.5	0.6942
AT1G62975	bHLH	bHLH125	basic helix-loop-helix (bHLH) ...		Lus10006707 [exp]	246.2	0.6563

Compare expression of checked genes

Lus10024813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.