Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14240 504 / 2e-169 Subtilase family protein (.1) AT2G05920 501 / 2e-168 Subtilase family protein (.1) AT4G34980 499 / 1e-167 SLP2 subtilisin-like serine protease 2 (.1) AT5G67360 498 / 6e-167 ARA12 Subtilase family protein (.1) AT5G67090 475 / 2e-158 Subtilisin-like serine endopeptidase family protein (.1) AT3G14067 465 / 5e-154 Subtilase family protein (.1) AT1G04110 450 / 2e-148 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G51750 445 / 2e-146 ATSBT1.3 subtilase 1.3 (.1) AT2G04160 445 / 3e-146 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59100 424 / 1e-138 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018721 [exp] 1414 / 0 AT5G67360 531 / 7e-179 Subtilase family protein (.1) Lus10002393 [exp] 571 / 0 AT5G67360 450 / 9e-148 Subtilase family protein (.1) Lus10027891 [exp] 570 / 0 AT5G67360 531 / 3e-178 Subtilase family protein (.1) Lus10002392 [exp] 565 / 0 AT5G67360 530 / 3e-178 Subtilase family protein (.1) Lus10001130 [exp] 556 / 0 AT5G67090 581 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009748 [exp] 554 / 0 AT5G67090 601 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10024815 [exp] 523 / 1e-176 AT5G67090 543 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009365 [exp] 505 / 1e-169 AT5G67090 637 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10033431 [exp] 494 / 2e-165 AT2G05920 1103 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G026600 [exp] 978 / 0 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.009G100500 [exp] 629 / 0 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.002G124500 [exp] 579 / 0 AT5G67090 577 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026700 [exp] 577 / 0 AT5G67090 582 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026500 [exp] 572 / 0 AT5G67090 604 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.007G045100 [exp] 559 / 0 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.003G071800 [exp] 517 / 2e-174 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.009G133400 [exp] 515 / 2e-173 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.004G173900 [exp] 513 / 1e-172 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.001G163600 [exp] 510 / 1e-171 AT3G14240 1174 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10024814 pacid=23178954 polypeptide=Lus10024814 locus=Lus10024814.g ID=Lus10024814.BGIv1.0 annot-version=v1.0 ATGTTGTTGTATTCGTACAGCCATGTTATGCATGGTTTTACAGCTAGGCTAACCCCTTCTCAGCTTGCTGAAATTGAGAGATCACCAGCCCACGTTGGCA CGTTCCGAGAAACATTTGGAAAGCTCTTCACCACGCGCAGTCCTAGCTTCTTGGGTCTCAGACATTACTCTGGGTTATGGCCGACTGCTAACTATGGAGA AGGCACCATCATCGGACTGATTGATTCAGGGATTTGGCCAGAGAGCGAGAGCTTTCACGACAAAGGAATGCCACCCGTGCCAAAGAGATGGAAGGGGAAG TGCGAAGAGCACCAAACATTCAGGGGTTCTTCCTGCAACAAGAAGCTAATTGGAGCTCAGTCTTTCAGCAGAGGAATCATAGCTGCAGGTAAAACAATTT CTCCCGACTACAACTCAACACGAGACCTTTCTGGCCATGGGACACACACAGCCTCCACAGCAGCAGGAAATTTCGTACTAGGAGTGAGTCATTTCGGATA TGCAAAAGGCACGGCAAGAGGGGTAGCTCCACGAGCCCACATTGCCATGTACAAAGTCCTCTTTGCTTTAGATACGCAACAATCCGCTGCCAGCGATGTG CTAGCTGGCATGGACCAAGCAATTGCAGATGGTGTAGACATAATGTCAATATCCATTGGCTTCGAACATGTACCTTACTATGAAGATGTAATAGCCATAG CTTCCTTTTCAGCAATCCGGAAAGGGATATTCGTGGTGGCTGCAGCAGGAAATGATGGTGGTTACAATGCAACTTACAGTGGAGCACCATGGATCACAAC AGTCGGAGCTGGCACCCTTGATCGCAGTTTTATTGCCAAGCTGACCCTGCCGAATGGGGTGGAAATTAGTGGACATTCATACTACCCTCAAGATATCTAT GCAACTGATGTACCTTTATACTACGGTAAACATGATAAGAAGAAAGCCACTTGCTACTATTCATCACTGAATCGCTCAGAAGTTCGAGGGAAGATCGTGC TTTGCGACAACAGCACAGACATTGCACTACAAGGTCAGATCGCAGAGCTTCAGAAAGCAGGAGCTTACGCAGGGATATTCATGACTGATTGGTCATTGTC ATTGCTACAGCCAGATGAATACACCATTCCCGGCCTCGTTCTAACAACGAACGACGGCGAACTGGTGAGGAAATACGCCACCGCTGCCAGCACAGGCAAA GCAAAAGTGAAGAGCCTGAAATTCAAATTCACGAATACAAGGGTGAAACCAACTCCTCAAGTGGCCGATTTCTCTTCTAGAGGGCCCGACCCGATCAATC CGAATATTCTAAAACCGGACATTATTGCTCCCGGAGACGATATTTTGGCAGCTGTGTCGCCGCAGAACCCGTACATGTCGCTCGGAGAATACAATCTGGT GGCAGACTACGCGTTCCTCTCCGGCACATCAATGGCGACGCCGCATGTCGCCGGAGTGGCAGCGATGCTAAAAGCGATCCATCCAGGATGGGGGCCGGCG GTGATAAGATCTGCTCTCATGACCACAGCCTATACCCTAGATAACACCGGCCAAGTATTCAGAGACAAATTCTCAGGACTGCCAACCACCCCGCTGGATT TTGGAGCCGGGCACATCGACCCGAACAGAGCCATGGATCCGGGTCTCATCTTCGACTTGAATGCTCAGGATTACATCGATCACTTGTGCGGGGAAAGCTA TACCAAGAAGCAAATGACGGCTATTCTGAGACAGCGGGAGTGGAACTGCAGCCGGGAAGTAACTGATCTGAACTATCCGTCCCTTACTGCAGTATTCATC GGCGGATCTAGAGCTCCGAGAAGTAAGAAATTCAGCAGGACGGTAACTAACGTGGGAGACGAAAGGTCCGTTTACCGAGCGACGCTGGTGGATGTTCCGC GGTGGATGAGGATCAGGGTTGAGCCAAGTAAGCTGTCGTTTCGTGAAAGATACGAGACTAAAAAATTTACAGTGAGTGTGGATGTTGACAAAGGTTCTCC AGCGGTGGTTTACAGCTTTCTGAGGTGGATGGATCAACACAGCCATGTAGTTTCAAGCCCCATTGTGGCGGTGACCCTGTAG
AA sequence Show only first row Show all	>Lus10024814 pacid=23178954 polypeptide=Lus10024814 locus=Lus10024814.g ID=Lus10024814.BGIv1.0 annot-version=v1.0 MLLYSYSHVMHGFTARLTPSQLAEIERSPAHVGTFRETFGKLFTTRSPSFLGLRHYSGLWPTANYGEGTIIGLIDSGIWPESESFHDKGMPPVPKRWKGK CEEHQTFRGSSCNKKLIGAQSFSRGIIAAGKTISPDYNSTRDLSGHGTHTASTAAGNFVLGVSHFGYAKGTARGVAPRAHIAMYKVLFALDTQQSAASDV LAGMDQAIADGVDIMSISIGFEHVPYYEDVIAIASFSAIRKGIFVVAAAGNDGGYNATYSGAPWITTVGAGTLDRSFIAKLTLPNGVEISGHSYYPQDIY ATDVPLYYGKHDKKKATCYYSSLNRSEVRGKIVLCDNSTDIALQGQIAELQKAGAYAGIFMTDWSLSLLQPDEYTIPGLVLTTNDGELVRKYATAASTGK AKVKSLKFKFTNTRVKPTPQVADFSSRGPDPINPNILKPDIIAPGDDILAAVSPQNPYMSLGEYNLVADYAFLSGTSMATPHVAGVAAMLKAIHPGWGPA VIRSALMTTAYTLDNTGQVFRDKFSGLPTTPLDFGAGHIDPNRAMDPGLIFDLNAQDYIDHLCGESYTKKQMTAILRQREWNCSREVTDLNYPSLTAVFI GGSRAPRSKKFSRTVTNVGDERSVYRATLVDVPRWMRIRVEPSKLSFRERYETKKFTVSVDVDKGSPAVVYSFLRWMDQHSHVVSSPIVAVTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14240			Subtilase family protein (.1)		Lus10024814 [exp]	0	1
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10022915 [exp]	3.2	0.8957
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10038383 [exp]	4.8	0.8958
AT5G17450		HIPP21	heavy metal associated isopren...		Lus10009115 [exp]	5.0	0.8485
AT1G72510			Protein of unknown function (D...		Lus10008118 [exp]	11.2	0.8554
AT2G42760			unknown protein		Lus10005429 [exp]	11.4	0.8783
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006667 [exp]	14.6	0.8854
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10006978 [exp]	15.2	0.8879
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10039565 [exp]	21.2	0.8475
AT4G40010		SNRK2-7, SNRK2....	SUCROSE NONFERMENTING 1-RELATE...		Lus10037685 [exp]	21.8	0.8603
AT4G24480			Protein kinase superfamily pro...		Lus10042868 [exp]	22.2	0.8581

Compare expression of checked genes

Lus10024814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.