Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67090 499 / 1e-166 Subtilisin-like serine endopeptidase family protein (.1) AT5G67360 479 / 6e-159 ARA12 Subtilase family protein (.1) AT2G05920 476 / 7e-158 Subtilase family protein (.1) AT3G14240 472 / 1e-155 Subtilase family protein (.1) AT3G14067 461 / 1e-151 Subtilase family protein (.1) AT4G34980 457 / 5e-150 SLP2 subtilisin-like serine protease 2 (.1) AT1G04110 453 / 2e-148 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G51750 446 / 6e-146 ATSBT1.3 subtilase 1.3 (.1) AT1G01900 442 / 2e-144 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT2G04160 413 / 4e-133 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009748 [exp] 607 / 0 AT5G67090 601 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10001130 [exp] 597 / 0 AT5G67090 581 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009365 [exp] 585 / 0 AT5G67090 637 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10018721 [exp] 518 / 8e-174 AT5G67360 531 / 7e-179 Subtilase family protein (.1) Lus10002392 [exp] 515 / 5e-172 AT5G67360 530 / 3e-178 Subtilase family protein (.1) Lus10027891 [exp] 511 / 1e-170 AT5G67360 531 / 3e-178 Subtilase family protein (.1) Lus10018720 [exp] 483 / 8e-166 AT5G51750 184 / 4e-52 subtilase 1.3 (.1) Lus10024814 [exp] 488 / 5e-163 AT3G14240 504 / 3e-169 Subtilase family protein (.1) Lus10033431 [exp] 476 / 1e-157 AT2G05920 1103 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G045100 [exp] 662 / 0 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026700 [exp] 661 / 0 AT5G67090 582 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G124500 [exp] 658 / 0 AT5G67090 577 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026500 [exp] 650 / 0 AT5G67090 604 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G100500 [exp] 543 / 0 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G026600 [exp] 542 / 0 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 488 / 8e-162 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.009G133400 [exp] 479 / 9e-159 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.001G163600 [exp] 475 / 4e-157 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.003G071800 [exp] 474 / 1e-156 AT3G14240 1199 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10024815 pacid=23178962 polypeptide=Lus10024815 locus=Lus10024815.g ID=Lus10024815.BGIv1.0 annot-version=v1.0 ATGGAGGGTTACAGCAGTAAACTGAAAACGCAGCAGCAGTACTACTCTAGTCCTTGCCTGTTTTTCCTCTGCTGCTTTCTTCTCTCAACAACTCTCCATG CTACTTCGAAGCCAATAGCTAACGAATTATCGACCTACATTGTTCATCTTGACCCTTCATTCCGTCCAAAGATGTTCACTACCCATTCACAATGGCATTC CTCGATCATCTCCTCCATCAAAACTTCGACTAACAACCCCCACAGCCCTCATTTCCTGTATTCCTACCACAATGCTCTTCATGGGTTTAGTGCCGTTTTG TCCCGACTTGAACTTCAAACTCTTCAAGACCTTCCAGGTTTTGTTTCTGCTTATAAAGACAAGGTTGTCACAGTTGACACTACCTACACTTCTGACTTCT TGTCTCTCAACCCATCCACTGGTCTCTGGCCAGCCTCCAAGTTCGGCGAAGATGTCATCATCGGTGTAATAGACACTGGCGTTTGGCCTGAGAGTGCAAG CTTTAACGACAACGGGATGACAAAAGTTCCAGCCAGATGGAAAGGGACTTGTCAGCAAGGACAGGACTTCAACTCTTCTCTATGCAACTTGAAGTTGATT GGAGCTAGATACTTCAACAAAGGTGTCATTGCTGCCAATCCTACTGTCAAATTAACGATGAATTCGGCTAGAGACACAGGGGGCCATGGTACACACACTT CCTCCACTGCGGCTGGAAACTACGTTCAAGGAGCAAACTTCTTTGGTTATGCTAGCGGTGTAGCTCGAGGTATGGCACCTCGAGCCAGGGTGGCCATGTA CAAGGTGATATGGCATGAGGGACGTTACGCCTCTGATGTTCTTGCTGGAATGGATCAAGCTGTAGCAGATGGTGTTGACATTATATCCATCTCCATGGGA TTCGATGGTGTACCGTTGTATCAAGATCCTATAGCTATAGCCTCATTTGGTGCTATGGAGAAGGGTATACTAGTCTCATCCTCTGCTGGAAATTTGGGAC CACGGGTTGGTCTCTTGCATAATGGTATCCCCTGGGTACTGACTGTAGCTGCTGGCACCATTGACCGCACTTTCGCTGCGACTTTAAGCTTTGGCAAAGA AGGTATTATTGTTGGGAGGAGCTTGTTCCCACTCGATGCATGGGTGAAAGATGAACAACTTCTCTACAACAAGACATTATCCAAATGTGACTCCATGGAA TTACTGTCTGAAGCTCCACGAGCTATCATTGTTTGTGAGGACACAGGGTTCATCGACGATCAGATGTACGCCATCTCCCTCTTAACAAATGTCGTTGGTG CTATTTTCATCTCGGATGTTCCGAACCTTCAAGTAACAAATTCTCCAGCTATGGTAATTACCTCCGCGGAATCAGAAGCAGTTATCAACTACATCAAAAC TAGCTCTGATCCTGTTGCTAGTATGAAATTCCAGCAGACTTTCGTCGGGAAAGGGGTAGCTCCTATGGCAGCTGCTTACACATCTAGGGGTCCTTCTCCA AATTGTCCTGCTGTTCTGAAGCCTGATGTGATGGCTCCAGGTTCCCTGGTCTTAGCTTCCTGGATTCCCAACGATTTTACAGCTGTCGTAGGCCAAAACA TAGAACTATCCAGTGAGGGGTTCAATCTGATTTCCGGAACATCAATGGCATGCCCTCATGCTTCCGGCGTAGCAGCACTTCTGAAAGGTGCACGTCCAGA ATGGAGCCATGCGGCTATACGGTCAGCCATGATGACCACTGGAACAACTCTGGACAATACCAGGAAACCAATCAAAGACGAGGGCCAAAATCTTACTGAT GCATCTCCTTTGGCAATGGGAGCTGGCCACATCATACCGAATAAGGCATTAGACCCTGGTCTAATCTATGATGCCACCCCACAAAACTACGTCTCTCTCC TATGTTCCATGAATTTCACCAAGAACCAAATTCTTACCATCACTAGGTCAAACACCTACAACTGTACAAACCCTTCACTCGATCTGAACTATCCATCATT CATAGCATTCTACAACAAGAACGTAACAACAGTTACAACTCAAGCTTATCAAAGAGTAGTGACAAATGTAGGAGGAGGAGCTGCTACGTATAAAGTGAAG GTAACTGCACCAAAGGGCTCGAAAGTTGCAGTCTGGCCAGAGACTTTGGTTTTCGGGAAGAATTATGAGAAACAGCAATATTCAATCAAGATTATGTATC CAAGCGATCACGATGGGAAAGTTTCATTTGGCTCAATCGTCTGGACGGATGAAAGTGGATCACATACAGTAAGGAGCCCTATTGTTGTGACACCAAGTTC AGGCAACTAA
AA sequence Show only first row Show all	>Lus10024815 pacid=23178962 polypeptide=Lus10024815 locus=Lus10024815.g ID=Lus10024815.BGIv1.0 annot-version=v1.0 MEGYSSKLKTQQQYYSSPCLFFLCCFLLSTTLHATSKPIANELSTYIVHLDPSFRPKMFTTHSQWHSSIISSIKTSTNNPHSPHFLYSYHNALHGFSAVL SRLELQTLQDLPGFVSAYKDKVVTVDTTYTSDFLSLNPSTGLWPASKFGEDVIIGVIDTGVWPESASFNDNGMTKVPARWKGTCQQGQDFNSSLCNLKLI GARYFNKGVIAANPTVKLTMNSARDTGGHGTHTSSTAAGNYVQGANFFGYASGVARGMAPRARVAMYKVIWHEGRYASDVLAGMDQAVADGVDIISISMG FDGVPLYQDPIAIASFGAMEKGILVSSSAGNLGPRVGLLHNGIPWVLTVAAGTIDRTFAATLSFGKEGIIVGRSLFPLDAWVKDEQLLYNKTLSKCDSME LLSEAPRAIIVCEDTGFIDDQMYAISLLTNVVGAIFISDVPNLQVTNSPAMVITSAESEAVINYIKTSSDPVASMKFQQTFVGKGVAPMAAAYTSRGPSP NCPAVLKPDVMAPGSLVLASWIPNDFTAVVGQNIELSSEGFNLISGTSMACPHASGVAALLKGARPEWSHAAIRSAMMTTGTTLDNTRKPIKDEGQNLTD ASPLAMGAGHIIPNKALDPGLIYDATPQNYVSLLCSMNFTKNQILTITRSNTYNCTNPSLDLNYPSFIAFYNKNVTTVTTQAYQRVVTNVGGGAATYKVK VTAPKGSKVAVWPETLVFGKNYEKQQYSIKIMYPSDHDGKVSFGSIVWTDESGSHTVRSPIVVTPSSGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67090			Subtilisin-like serine endopep...		Lus10024815 [exp]	0	1
AT1G10800			unknown protein		Lus10037441 [exp]	1.7	0.9420
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10027242 [exp]	7.1	0.9329
AT5G26749			C2H2 and C2HC zinc fingers sup...		Lus10031439 [exp]	8.7	0.9069
AT3G17152			Plant invertase/pectin methyle...		Lus10037793 [exp]	9.5	0.9251
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10023226 [exp]	11.3	0.9190
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10003269 [exp]	15.6	0.9301
AT1G16760			Protein kinase protein with ad...		Lus10042205 [exp]	15.8	0.8773
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10004161 [exp]	16.5	0.9115
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10038952 [exp]	18.1	0.9316
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Lus10008988 [exp]	21.2	0.8957

Compare expression of checked genes

Lus10024815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.