Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37370 471 / 2e-162 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37340 464 / 4e-160 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT4G37330 461 / 5e-159 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37360 461 / 1e-158 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT5G36220 459 / 7e-158 CYP91A1, CYP81D1 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) AT4G37320 449 / 4e-154 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT5G67310 446 / 6e-153 CYP81G1 "cytochrome P450, family 81, subfamily G, polypeptide 1", cytochrome P450, family 81, subfamily G, polypeptide 1 (.1) AT4G37310 442 / 4e-151 CYP81H1 "cytochrome P450, family 81, subfamily H, polypeptide 1", cytochrome P450, family 81, subfamily H, polypeptide 1 (.1) AT4G37400 436 / 4e-149 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT4G37430 431 / 7e-147 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018717 [exp] 631 / 0 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10020437 [exp] 532 / 0 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024819 [exp] 465 / 4e-160 AT4G37320 493 / 3e-171 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024820 [exp] 460 / 7e-158 AT5G36220 493 / 2e-171 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10010373 [exp] 456 / 1e-157 AT4G37370 375 / 3e-126 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10011958 [exp] 457 / 3e-157 AT5G36220 548 / 0.0 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10024818 [exp] 452 / 6e-155 AT4G37320 480 / 2e-166 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10027614 [exp] 419 / 6e-143 AT4G37370 496 / 6e-174 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10018711 [exp] 418 / 1e-141 AT4G37370 441 / 5e-151 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G006000 [exp] 506 / 3e-176 AT4G37370 526 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007000 [exp] 483 / 3e-167 AT4G37370 525 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.002G121200 [exp] 476 / 1e-164 AT4G37340 465 / 1e-160 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) Potri.014G021800 [exp] 476 / 2e-164 AT4G37360 458 / 1e-157 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) Potri.002G121400 [exp] 474 / 1e-163 AT4G37370 470 / 1e-162 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G008200 [exp] 472 / 7e-163 AT4G37370 531 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007900 [exp] 471 / 1e-162 AT4G37370 524 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G020600 [exp] 468 / 2e-161 AT4G37370 479 / 4e-166 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G020500 [exp] 464 / 5e-160 AT4G37370 462 / 2e-159 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.002G121100 [exp] 451 / 1e-154 AT4G37370 429 / 2e-146 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10024816 pacid=23178989 polypeptide=Lus10024816 locus=Lus10024816.g ID=Lus10024816.BGIv1.0 annot-version=v1.0 ATGGAGGGATTTATGCCTTACTTGCTACTCACAATTCTCGGGACACTCATACTTTCCAAGCTCCTAATTACTCCATGGAAACGACGTAGTAACGATCTCC CACCAAGTCCGCCCTCACTTCCCTTCATCGGCCATCTCCATCTCCTCAAAACACCAATCCACAGAACCTTGGAAACCCTCTCAAAACAGTACGGCCCAAT TTACTTCCTCTCCATGGGCGTCCGAAAAGTCGTAGTAGTATCATCCCCGTCTCTAGCCGACGAATGTTTCAACAAACACGACATCGTTTTCGCCAACCGG CCCAACGACCTCCTGGGTTGGAAAATCATTGGCTACAACTACTCAACTATGGGAGCCTCCCCGTACGGCGAGCACTGGCGTAACCTCCGCCGCCTTTCCA CCATCGAGCTACTCTCAACCTCTCGCCTCAACTCCTTCATCCGCCTCCGCCATGAAGAAGTCAGGATCCTGATTAGCGACCTTTTCAAAAAGGTCGTCGT TTCAGGTTCTGGTGGGTCGGGAGGTAAGGTGGAGATGAAATCGAGGCTGTTGGGGTTGACGATGAATATTATAATGAGGATGGTTGTCGGGAAGAGATAT TTCGGGATGGAAGAAGGGGAAGAGGACGTGGAAGAAAGTGAGAGGTTTAAGGAATTGATGAGGCAAGTATTTGAGCTTAGCGGGGCGGCGAACCCCGGTG ATTATTTGCCGTTGCTGAGGTGGATTGATTTCGGCGGGTTGGCGAAGAGGATGTGGAAAGTTCAGGCGAAGTCCGATGCTTTCTTCCAAGGCTTAATCGA CGAGCATAAAATGAACCGGCGGGATGGCGACGTTGTTACTAATCCTGATGGTAGAAAGACGATGATAGATACTATGTTGTCCATGCAAGAATCTGAACCT GAAACTTACACCGACGACATCATCAAAGGCCATCTCATGACGATGATACTAGCAGGGACAGACACGTCAGCGGCGACAATAGAATGGGCAATGTCACTCT TAGTGAACCACCCAGAGGTACTCCAAAATGCAAGAGACGAGCTAGACAAAGTCGTCGGCAAAAACCGACTAATTGAAGAATCCGATTGCCCAAACCTACC ATTTCTTCAGGGTATAATTAACGAGACATTTCGTCTGTATCCAGCTGCACCAATTCTAGTGCCGCACCAATCTTCGGAGGATTGCGCCATCGGGGGCTAT CCCATTTCGAAAGGCACGATGTTAATGGTTAATGCGTGGGCTATTCACAGGGACCCCGCAACTTGGGATGATCCTACAAGTTTCAAGCCCGAGAGGCATG AAGCCGGATTGGTGAAGGTCGAGGGTGGTTGTAAGTTTTTGCCATTTGGGATGGGAAGAAGGTCGTGCCCTGGATCGGGGCTCGCGACTAGGGTGGTTAG CCTCGCGCTGGGTGCGTTGATTCAGTGTTTCGAGTGGGAGAGAGATGGTGAAGAGATGCTGGACATGACTGAAGGGGAGGGGCTAACTATGCCCAAGCTT GTGCCTTTGGAGGTCTTGTGTAAGCCTAGAGAGTTTACCGAACATGTTTTGGTCACTCATCTGTGA
AA sequence Show only first row Show all	>Lus10024816 pacid=23178989 polypeptide=Lus10024816 locus=Lus10024816.g ID=Lus10024816.BGIv1.0 annot-version=v1.0 MEGFMPYLLLTILGTLILSKLLITPWKRRSNDLPPSPPSLPFIGHLHLLKTPIHRTLETLSKQYGPIYFLSMGVRKVVVVSSPSLADECFNKHDIVFANR PNDLLGWKIIGYNYSTMGASPYGEHWRNLRRLSTIELLSTSRLNSFIRLRHEEVRILISDLFKKVVVSGSGGSGGKVEMKSRLLGLTMNIIMRMVVGKRY FGMEEGEEDVEESERFKELMRQVFELSGAANPGDYLPLLRWIDFGGLAKRMWKVQAKSDAFFQGLIDEHKMNRRDGDVVTNPDGRKTMIDTMLSMQESEP ETYTDDIIKGHLMTMILAGTDTSAATIEWAMSLLVNHPEVLQNARDELDKVVGKNRLIEESDCPNLPFLQGIINETFRLYPAAPILVPHQSSEDCAIGGY PISKGTMLMVNAWAIHRDPATWDDPTSFKPERHEAGLVKVEGGCKFLPFGMGRRSCPGSGLATRVVSLALGALIQCFEWERDGEEMLDMTEGEGLTMPKL VPLEVLCKPREFTEHVLVTHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10024816 [exp]	0	1
					Lus10014737 [exp]	3.5	0.9609
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10028049 [exp]	4.9	0.9609
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10029577 [exp]	5.5	0.6904
AT3G04060	NAC	ANAC046	NAC domain containing protein ...		Lus10033699 [exp]	6.0	0.9609
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10028996 [exp]	6.2	0.9130
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Lus10026027 [exp]	6.6	0.7498
					Lus10019558 [exp]	6.9	0.9609
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10014713 [exp]	7.5	0.7039
AT4G16195			Plant self-incompatibility pro...		Lus10019768 [exp]	7.7	0.9609
AT5G55690	MADS		MADS-box transcription factor ...		Lus10019819 [exp]	8.2	0.6682

Compare expression of checked genes

Lus10024816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.