Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37360 443 / 9e-152 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT4G37320 440 / 2e-150 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37340 437 / 2e-149 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT5G36220 437 / 3e-149 CYP91A1, CYP81D1 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) AT4G37370 426 / 3e-145 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37330 413 / 4e-140 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT2G23190 405 / 2e-136 CYP81D7 "cytochrome P450, family 81, subfamily D, polypeptide 7", cytochrome P450, family 81, subfamily D, polypeptide 7 (.1) AT3G28740 398 / 4e-134 CYP81D11, CYP81D1 cytochrome P450, family 81, subfamily D, polypeptide 11, Cytochrome P450 superfamily protein (.1) AT4G37400 397 / 1e-133 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT4G37430 394 / 9e-133 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024819 [exp] 848 / 0 AT4G37320 493 / 3e-171 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024820 [exp] 776 / 0 AT5G36220 493 / 2e-171 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10018717 [exp] 477 / 7e-165 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10020437 [exp] 460 / 3e-158 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10041643 [exp] 460 / 4e-158 AT4G37320 433 / 6e-148 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024816 [exp] 452 / 6e-155 AT4G37370 506 / 2e-176 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024078 [exp] 451 / 1e-154 AT4G37320 437 / 3e-149 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10018711 [exp] 431 / 1e-146 AT4G37370 441 / 5e-151 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10011958 [exp] 418 / 8e-142 AT5G36220 548 / 0.0 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G021800 [exp] 609 / 0 AT4G37360 458 / 1e-157 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) Potri.003G006000 [exp] 463 / 1e-159 AT4G37370 526 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.002G121400 [exp] 462 / 2e-159 AT4G37370 470 / 1e-162 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.002G121200 [exp] 461 / 9e-159 AT4G37340 465 / 1e-160 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) Potri.014G020500 [exp] 449 / 6e-154 AT4G37370 462 / 2e-159 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G008200 [exp] 449 / 6e-154 AT4G37370 531 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G020600 [exp] 440 / 2e-150 AT4G37370 479 / 4e-166 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007000 [exp] 440 / 2e-150 AT4G37370 525 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.002G121100 [exp] 439 / 3e-150 AT4G37370 429 / 2e-146 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007900 [exp] 434 / 3e-148 AT4G37370 524 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10024818 pacid=23178931 polypeptide=Lus10024818 locus=Lus10024818.g ID=Lus10024818.BGIv1.0 annot-version=v1.0 ATGGCGTTCACTCTCTTCTTTGGTTTTCTTGCCTTCATCTCCTTCCTCATCTTCCTTGCTCGTAATTCAAAACTAATCAACCCCGCCATAAATTCGCGGC CGCCAAGCCCATCTCCTCGTCCCATCACAGGCCACCTCCACTTGCTAAAGACATCGCCGCTACATCGCGCCCTACACAACATTTCGCAAACATACGGAGA CATCTTCTCCCTCCGGTTTGGCACCCGAAACGTCCTTGTAATATCCTCGCCATCCCTCGTGGAGGAGTGTCTCACCAAAAATGACGTCACATTCGCCAAT CGCCCACGCCTAATCACCGGAAAGCACCTCAACTACAACAACACCACCATGGGGTTTTCTTCCTACGGCGACCACTGGAGAAAGCTTAGGCGTCTGACCA CGATCGAGCTTTTTTCCACCAGCCGGATCAATTCCTTCTCCGGGATTCGAACCGACGAGGTCCAACTGCTGATCAAGAAGATTTTCCGAGGCGGGAAGGC GAACAATAAGGTTAATCTGACGGAGAAACTCCTGGAGCTAACTTTCAACATCATGATGAGGATGATTGCCGGGAAGAGGTACTACGGCGACGGTGAGGAG GTGGTGGATGAAGGAGCTAAGGAATTTCAGGACATAATTAAAGAGACGGATGCCCTCCGTGGAAGCTCCAATATCAACGATTATATACCCATTTTGAAGT GGGTGGATTACGGAGGCGTGGAGAAGAAGATGATGAAAGTGGGGCAAAAGATGGATAAATTCTTCCAAACCCTCGTCGACGAGCAACAACGGCTAACAAG TAATGTCGGAATCGATGAATCGAATCAGCGACGAAAGACCAACTTGATCGATGTCCTGCTATCGCTTAGAGAAACTGATCTCGAGTTTTACACTGATCAG ACCATCAAAGGCATAATATTGACGACGGTAACAGCAGGGACTCAAACATCAGCAGCAACATTAGGGTGGGCAATGTCGCTTCTGCTCAACAATCCAGAAA AGATGGACAAGGCTTTTTCAGAGATCGAATCCATCGTCGGATTAGACCATTTGTTCGAAGAATCAGACATTCCAAAGCTGAAATACTTACACAACATAAT CAACGAATCCCTTCGACTGTTTCCCCCAAATCCACTTCTACTGCCACACGAATCGTCAACAAAGTGCAAGGTGGGTGGGTTCGATGTGGCAAGTGGCACA ATGTTGCTGGTGAACACATGGAGCATGAACAGAGACCCTAAGTTCTGGGACGAGCCGGAAAAATTTGTGCCGGAGAGATTTGAAGGTGGCGGAGGTGGAG GAGAAGGGAATAGCGGTGGTTTCAAATTGTTGCCGTTTGGGGCCGGAAGGCGTGCTTGTCCCGGAGCAGGCCTGGCCAAAAGAATAGTGGCGTTGACGTT GGGTGCTCTGATTCAGTCATTTCGATGGGAAAGGGTTGGGGAGGAGGAGATTGATATGAAAGAAGGAAATGGCCTCACGATGTGTAAAGCTTTGCCGTTG GAAGCGATTTGTAGGCCACGGGAAGAAATGGTCGATCTTCTCAACTTGCTCTAA
AA sequence Show only first row Show all	>Lus10024818 pacid=23178931 polypeptide=Lus10024818 locus=Lus10024818.g ID=Lus10024818.BGIv1.0 annot-version=v1.0 MAFTLFFGFLAFISFLIFLARNSKLINPAINSRPPSPSPRPITGHLHLLKTSPLHRALHNISQTYGDIFSLRFGTRNVLVISSPSLVEECLTKNDVTFAN RPRLITGKHLNYNNTTMGFSSYGDHWRKLRRLTTIELFSTSRINSFSGIRTDEVQLLIKKIFRGGKANNKVNLTEKLLELTFNIMMRMIAGKRYYGDGEE VVDEGAKEFQDIIKETDALRGSSNINDYIPILKWVDYGGVEKKMMKVGQKMDKFFQTLVDEQQRLTSNVGIDESNQRRKTNLIDVLLSLRETDLEFYTDQ TIKGIILTTVTAGTQTSAATLGWAMSLLLNNPEKMDKAFSEIESIVGLDHLFEESDIPKLKYLHNIINESLRLFPPNPLLLPHESSTKCKVGGFDVASGT MLLVNTWSMNRDPKFWDEPEKFVPERFEGGGGGGEGNSGGFKLLPFGAGRRACPGAGLAKRIVALTLGALIQSFRWERVGEEEIDMKEGNGLTMCKALPL EAICRPREEMVDLLNLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024818 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Lus10025098 [exp]	1.0	0.9310
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10024487 [exp]	2.4	0.9194
AT2G24210		AtTPS10	terpene synthase 10 (.1)		Lus10006355 [exp]	5.5	0.9118
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10010428 [exp]	7.2	0.9200
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10040908 [exp]	7.7	0.8978
AT5G59510		RTFL5, DVL18	DEVIL 18, ROTUNDIFOLIA like 5 ...		Lus10001569 [exp]	7.9	0.8834
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10042882 [exp]	8.7	0.8937
					Lus10039498 [exp]	9.5	0.8661
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10041457 [exp]	10.6	0.8887
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10016274 [exp]	11.8	0.9173

Compare expression of checked genes

Lus10024818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.