Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37360 482 / 4e-167 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT4G37340 476 / 7e-165 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT4G37320 476 / 1e-164 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT5G36220 470 / 3e-162 CYP91A1, CYP81D1 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) AT4G37370 462 / 2e-159 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37330 456 / 7e-157 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT2G23190 442 / 5e-151 CYP81D7 "cytochrome P450, family 81, subfamily D, polypeptide 7", cytochrome P450, family 81, subfamily D, polypeptide 7 (.1) AT3G28740 432 / 2e-147 CYP81D11, CYP81D1 cytochrome P450, family 81, subfamily D, polypeptide 11, Cytochrome P450 superfamily protein (.1) AT4G37400 430 / 2e-146 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT4G37430 424 / 3e-144 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024818 [exp] 878 / 0 AT4G37320 480 / 2e-166 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024820 [exp] 801 / 0 AT5G36220 493 / 2e-171 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10018717 [exp] 515 / 9e-180 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10020437 [exp] 493 / 3e-171 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10041643 [exp] 491 / 3e-170 AT4G37320 433 / 6e-148 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024078 [exp] 486 / 2e-168 AT4G37320 437 / 3e-149 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024816 [exp] 482 / 9e-167 AT4G37370 506 / 2e-176 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10018711 [exp] 459 / 1e-157 AT4G37370 441 / 5e-151 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10011958 [exp] 456 / 1e-156 AT5G36220 548 / 0.0 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G021800 [exp] 629 / 0 AT4G37360 458 / 1e-157 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) Potri.002G121400 [exp] 495 / 4e-172 AT4G37370 470 / 1e-162 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.002G121200 [exp] 493 / 1e-171 AT4G37340 465 / 1e-160 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) Potri.014G020500 [exp] 488 / 3e-169 AT4G37370 462 / 2e-159 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G020600 [exp] 486 / 2e-168 AT4G37370 479 / 4e-166 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.002G121100 [exp] 485 / 2e-168 AT4G37370 429 / 2e-146 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G006000 [exp] 484 / 6e-168 AT4G37370 526 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G008200 [exp] 476 / 1e-164 AT4G37370 531 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007000 [exp] 469 / 9e-162 AT4G37370 525 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007900 [exp] 466 / 2e-160 AT4G37370 524 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10024819 pacid=23178867 polypeptide=Lus10024819 locus=Lus10024819.g ID=Lus10024819.BGIv1.0 annot-version=v1.0 ATGGAGTTCACTCTCTTCCTCGGTTTCTTTGTCTTCATCTCCTTCCTCATCGTTCTTGCTCGTAATTCAAAACTAATCAATCCCGTCAAAAATTCGCGGC CGCCAAGCCCACCTCCTCGTCCAATCACAGGCCATCTCCACTTGTTAAAGAAATCGCCGCTCCATCGCGCCCTACATGACATTTCGCAGAAATACGGAGA CATCTTCTTCCTCCGGTTCGGAACCCGAAACGTCCTCGTAATTTCCTCGCCATCCCTCGTAGAGGAATGCTTCACCAAAAACGACGTCACATTCGCCAAT CGCCCACGCCTAATGACAGGAAAGCACCTCAACTACAACAACACCACCATGGGGTTTTCTTCCTACGGCGACCACTGGAGAAGCCTCAGGCGTCTAACCA CCATCGAGCTCTTCTCCACCAACCGGATCAATTCCTTCTCCGGGATTCGAACCGATGAGGTCAAACTGCTGATCAAAAAGATTTTCCGTGGCGGGAAGGC GAACAGTAAGGTTAATCTGACGGAGAAACTACTGGATCTTACTTTCAACGTCGTGATGAGGATGATTGCAGGGAAGAGGTACTATGGCGACGGTAAGGAG GAGGTGGTGGATGAAGGAGCTAAGGAGTTCCAGGACATAATTAAAGAGATGGATGCTCTCCGTGGAAGCTCCAATATCAACGATTATATACCCATTTTGA AGTGGGTGGATTACGGAGGCGTGGAGAAGAAGATGATGAAAGTGGGTCGGAAGATGGATGGATTCTTGCAAAGCCTCGTCGACGAGCAACTAAGGGTAAC AAGTAATGTCGGAATTGATGAACCGAATCAGCAACGAAAGACCAATTTGATCGATGTCCTGTTATCGCTTAGAGAAACAGACCCCGAGTTTTACACTGAT CAGACCATCAAAGGCATAATATTGACGACGGTGACAGCAGGGACTCAAACATCAGCAGCAACATTAGAATGGGCAATGTCGCTTCTGCTCAACAATCCAG ACAAAATGAACAAGGCTTTTTCGGAGATTGAATCTATCGTCGGATTAGACCATTTGCTCGAAGAATCAGACATTCCAAAGTTGAACTACTTACACAACAT AATCAACGAATCCCATCGACTGTTTCCACCAACGCCACTTCTTTTGCCACACGAATCTTCAGCAGAGTGCAAGGTGGGTGGTTTTGATGTGCCAAGTGGG ACAATGTTGCTGGTGAACACATGGAGCATGAACAGAGACCCTAAGTTCTGGGACGAGCCGGAAAAATTTCTGCCGGAGAGATTTGCAGGCGGAGGTGGAG GAGAAGGGAATAGCGGTGGTTTCAAATTGTTGTCGTTTGGAGCTGGAAGGCGTGCTTGTCCAGGAGCAGGTCTGGCCAAGAGAATAGTGACGTTGACGTT GGGTGCTCTGATTCAGTCGTTTCGATGGGAGAGGGTCGGGGAGGAGGAGATTGATATGAAAGAAGGATCTGGCCTCAGTATGCCTAAAGCTTTGCCGTTA GAAGCGATTTGTAAGCCACGGGAAGAAATGGTCGACCTTCTCAACTCGCTCTAA
AA sequence Show only first row Show all	>Lus10024819 pacid=23178867 polypeptide=Lus10024819 locus=Lus10024819.g ID=Lus10024819.BGIv1.0 annot-version=v1.0 MEFTLFLGFFVFISFLIVLARNSKLINPVKNSRPPSPPPRPITGHLHLLKKSPLHRALHDISQKYGDIFFLRFGTRNVLVISSPSLVEECFTKNDVTFAN RPRLMTGKHLNYNNTTMGFSSYGDHWRSLRRLTTIELFSTNRINSFSGIRTDEVKLLIKKIFRGGKANSKVNLTEKLLDLTFNVVMRMIAGKRYYGDGKE EVVDEGAKEFQDIIKEMDALRGSSNINDYIPILKWVDYGGVEKKMMKVGRKMDGFLQSLVDEQLRVTSNVGIDEPNQQRKTNLIDVLLSLRETDPEFYTD QTIKGIILTTVTAGTQTSAATLEWAMSLLLNNPDKMNKAFSEIESIVGLDHLLEESDIPKLNYLHNIINESHRLFPPTPLLLPHESSAECKVGGFDVPSG TMLLVNTWSMNRDPKFWDEPEKFLPERFAGGGGGEGNSGGFKLLSFGAGRRACPGAGLAKRIVTLTLGALIQSFRWERVGEEEIDMKEGSGLSMPKALPL EAICKPREEMVDLLNSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024819 [exp]	0	1
AT4G22860			Cell cycle regulated microtubu...		Lus10031690 [exp]	2.2	0.9275
AT2G28610	HD	PRS1, PRS, WOX3	WUSCHEL RELATED HOMEOBOX 3, PR...		Lus10023332 [exp]	7.3	0.9175
AT4G22756		ATSMO1-2, ATSMO...	sterol C4-methyl oxidase 1-2 (...		Lus10004324 [exp]	20.0	0.9227
AT1G29430			SAUR-like auxin-responsive pro...		Lus10025115 [exp]	26.9	0.9062
AT1G44224			ECA1 gametogenesis related fam...		Lus10039882 [exp]	29.2	0.8751
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10019086 [exp]	33.7	0.9062
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024627 [exp]	40.2	0.9047
AT1G50310		ATSTP9	sugar transporter 9 (.1)		Lus10013441 [exp]	43.8	0.9017
					Lus10013528 [exp]	47.0	0.9011
AT5G14570		ATNRT2.7	high affinity nitrate transpor...		Lus10008767 [exp]	47.1	0.9004

Compare expression of checked genes

Lus10024819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.