Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37370 426 / 3e-145 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37360 426 / 6e-145 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT4G37320 426 / 6e-145 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT5G36220 423 / 7e-144 CYP91A1, CYP81D1 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) AT4G37340 421 / 5e-143 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT4G37330 415 / 7e-141 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT2G23190 395 / 3e-132 CYP81D7 "cytochrome P450, family 81, subfamily D, polypeptide 7", cytochrome P450, family 81, subfamily D, polypeptide 7 (.1) AT5G57220 389 / 6e-131 CYP81F2 "cytochrome P450, family 81, subfamily F, polypeptide 2", cytochrome P450, family 81, subfamily F, polypeptide 2 (.1) AT3G28740 388 / 5e-130 CYP81D11, CYP81D1 cytochrome P450, family 81, subfamily D, polypeptide 11, Cytochrome P450 superfamily protein (.1) AT4G37400 387 / 7e-130 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024819 [exp] 763 / 0 AT4G37320 493 / 3e-171 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024818 [exp] 745 / 0 AT4G37320 480 / 2e-166 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10018717 [exp] 474 / 1e-163 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10020437 [exp] 466 / 1e-160 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024816 [exp] 456 / 3e-156 AT4G37370 506 / 2e-176 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024078 [exp] 430 / 3e-146 AT4G37320 437 / 3e-149 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10041643 [exp] 426 / 1e-144 AT4G37320 433 / 6e-148 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10018711 [exp] 414 / 5e-140 AT4G37370 441 / 5e-151 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10011958 [exp] 409 / 4e-138 AT5G36220 548 / 0.0 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G021800 [exp] 574 / 0 AT4G37360 458 / 1e-157 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) Potri.002G121200 [exp] 457 / 3e-157 AT4G37340 465 / 1e-160 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) Potri.002G121400 [exp] 454 / 3e-156 AT4G37370 470 / 1e-162 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G020500 [exp] 447 / 2e-153 AT4G37370 462 / 2e-159 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G020600 [exp] 441 / 4e-151 AT4G37370 479 / 4e-166 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.002G121100 [exp] 440 / 1e-150 AT4G37370 429 / 2e-146 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G006000 [exp] 438 / 9e-150 AT4G37370 526 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G008200 [exp] 433 / 1e-147 AT4G37370 531 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007000 [exp] 425 / 1e-144 AT4G37370 525 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007900 [exp] 425 / 2e-144 AT4G37370 524 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10024820 pacid=23178935 polypeptide=Lus10024820 locus=Lus10024820.g ID=Lus10024820.BGIv1.0 annot-version=v1.0 ATGGAGTCTCAGTCTACTCTCTCCCTCACTTTCATTCTCTTCTTCTCCACCTTATTCATCGTTCTTGCCCGTAAACTAATCAAACCCACCAAAAATTCTC CGCCGCCAAGCCCACCGTCTCGTCCTATTACCGGCCACCTTCACTTACTAAAGCCGCCGCTCCATCGGGCCCTGGACGACCTTTCCGAAAAATACGGAGA CATCTTTTCTCTCCGGTCCGGTACCAGGAAGGTATTGGTTATTTCCTCGCCATCCCTCGTGGAGGAATGCTTCACCAAAAACGACGTCACATTCGCCAAC CGCCCACGCCTAATCGCCGGAAAGCACCTCAACTACAACAGCACCACCATGGGGTTCTCATCCTACGGCGACCACTGGAGAAACCTCAGGCGTTTAACCA CCATCGAGCTCTTCTCCACCAGCCGGATCAATTCCTTCTCCTCGATTCGAACCGACGAGGTGCGATTGCTGCTCAAGAAGCTATTTTCAGGGGCGAACAA CAAGGTTAATCTGACGGAGAAACTAGTGGAGCTGACTTTCAACGTTGTGATGAGAATGATTGCCGGGAAGAGATACTACGGCGGCGACGGTGAGGAGGAG GAGGTGGTGGATGAAGGAGCTAAGGAGTTTCAGGACATAATTAAAGAGATGGAGGCCCTCCGTGGAAGCTCAAATATCAACGATTATATACCCATTTTGC GGTGGGTGGATTACGGAGGCGTTGAGAAGAAGATGATGAAATTGGGGCGGAAGATGGATGGATTCTTGCAAGGCCTCGTCGATGAGCAACTAAGGATAAC AAGTAATGTGGGAGTTGATGAATCGAATCAGCAAAGGAGGAAGAAGACCAATTTGATCCAGGTCCTGCTTTCTCTTAGAGAAACAGACCCTGAATTTTAC AGTGATCAGACCATTAAAGGCATCATCTCGACGACGGTAACAGCAGGGACTCAAACATCAGCAGCAACATTAGAATGGGCAATGTCGCTTCTCCTCAACA ATCCAGACAAGATGGACAAGGCTTTTTCGGAGATTGAAACCATCGTCGGATTAGACCATTTGTTCGAAGAATCAGACATTCCAAAGTTGAACTACTTGCA CAACATAATCAACGAATCCCATCGACTGTTTCCACCAGCGCCACTTCTACTGCCACACGAATCGTCAACAAAGTGCAAGGTGGGCGGGTTCGATGTGGCA AGTGGGACAATGTTGCTGGTGAATACATGGAGCATGAACAGAGACCCTAAGTTCTGGGACCAGCCGGAAAACTTTGTGCCAGAGAGATTTGAAGGCGGCC GAGGAGAAGGAGAAGGGAACAACGGTGGGTTTAAATTGTTACCGTTTGGGGCCGGTAGGCGTGCTTGTCCCGGAGCAGGTCTAGCGAAGAGAATAGTGGC ATTAACGTTGGGTGCTCTGATTCAGTCGTTTCGATGGGAAAGGGTCGGGGAAGAAGAAGTTGATATGGAAGAAGGATCTGGCCTCACGATGCCGAAAGCT TTGCCGTTGGAAGCGATTTGTTCGCCGCGGGAAGAAATGGTCGACCTTCTCAACTCTCTCTAA
AA sequence Show only first row Show all	>Lus10024820 pacid=23178935 polypeptide=Lus10024820 locus=Lus10024820.g ID=Lus10024820.BGIv1.0 annot-version=v1.0 MESQSTLSLTFILFFSTLFIVLARKLIKPTKNSPPPSPPSRPITGHLHLLKPPLHRALDDLSEKYGDIFSLRSGTRKVLVISSPSLVEECFTKNDVTFAN RPRLIAGKHLNYNSTTMGFSSYGDHWRNLRRLTTIELFSTSRINSFSSIRTDEVRLLLKKLFSGANNKVNLTEKLVELTFNVVMRMIAGKRYYGGDGEEE EVVDEGAKEFQDIIKEMEALRGSSNINDYIPILRWVDYGGVEKKMMKLGRKMDGFLQGLVDEQLRITSNVGVDESNQQRRKKTNLIQVLLSLRETDPEFY SDQTIKGIISTTVTAGTQTSAATLEWAMSLLLNNPDKMDKAFSEIETIVGLDHLFEESDIPKLNYLHNIINESHRLFPPAPLLLPHESSTKCKVGGFDVA SGTMLLVNTWSMNRDPKFWDQPENFVPERFEGGRGEGEGNNGGFKLLPFGAGRRACPGAGLAKRIVALTLGALIQSFRWERVGEEEVDMEEGSGLTMPKA LPLEAICSPREEMVDLLNSL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10024820 [exp]	0	1
AT5G61390			Polynucleotidyl transferase, r...		Lus10000567 [exp]	1.4	0.8833
AT5G52340		ATEXO70A2	exocyst subunit exo70 family p...		Lus10021283 [exp]	1.7	0.8776
AT4G00880			SAUR-like auxin-responsive pro...		Lus10032949 [exp]	2.0	0.9016
AT1G71110			unknown protein		Lus10007962 [exp]	2.2	0.8582
AT2G28680			RmlC-like cupins superfamily p...		Lus10005880 [exp]	3.2	0.8417
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10001183 [exp]	4.5	0.8713
AT2G46690			SAUR-like auxin-responsive pro...		Lus10008845 [exp]	5.1	0.8351
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10008702 [exp]	5.3	0.8525
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10026117 [exp]	5.5	0.8165
AT4G31730		ATGDU1, GDU1	glutamine dumper 1 (.1)		Lus10020107 [exp]	5.5	0.8530

Compare expression of checked genes

Lus10024820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.