Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018716 [exp] 46 / 2e-06 ND 39 / 0.001
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024821 pacid=23178971 polypeptide=Lus10024821 locus=Lus10024821.g ID=Lus10024821.BGIv1.0 annot-version=v1.0 ATGGGAGGCGGCAATGAGAATGACTCTAGTGACAAAGGACTGTTTTCGCACCTAGGTGCATTTGCTGCTGGTTCACATTACCCTCAGCATGGAGGATATC CTCCACAAGGTTATCCTCCCCCTGGCGGATATCCTCCTCAACATGGATATCCACCTGCACCCCATGGATATCCTCCGGCTGGTGGATACCCTCCAGCAGG TTACCCCCCTCCTGGTGGATATCCTGCTCCACCTCCTCCTCACGGATATCCTAGTCATGGACATGGTGGTTATCCTCCGGCAGGTTATCCCGGTCCCTCC AATCATTCTGGGCATGGAGGTGGTATGGGGGCGTTGTTAGCTGGAGGAGCAGCTGCTGCAGCTGCGGCCTACGGGGCTCATCACATGTCTCATGGTGCTC ACGGTTATGGTCATGGAGGCTACGGTCATGGAGGCTACGGTCATGGTTATGGTCATGGAGGGTTTGGTCATGGCAAGTTCAAGCATGGAAAGTTCAAGCA CGGCAAGTTTGGAAAGCATGGGATGTTTGGAAAGCATAAGGGCGGCAAACACTTCAAGAGATGGAAGTAA
AA sequence Show only first row Show all	>Lus10024821 pacid=23178971 polypeptide=Lus10024821 locus=Lus10024821.g ID=Lus10024821.BGIv1.0 annot-version=v1.0 MGGGNENDSSDKGLFSHLGAFAAGSHYPQHGGYPPQGYPPPGGYPPQHGYPPAPHGYPPAGGYPPAGYPPPGGYPAPPPPHGYPSHGHGGYPPAGYPGPS NHSGHGGGMGALLAGGAAAAAAAYGAHHMSHGAHGYGHGGYGHGGYGHGYGHGGFGHGKFKHGKFKHGKFGKHGMFGKHKGGKHFKRWK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024821 [exp]	0	1
AT2G46080			unknown protein		Lus10007920 [exp]	1.0	0.9016
AT5G16110			unknown protein		Lus10009170 [exp]	2.4	0.8873
AT5G04550			Protein of unknown function (D...		Lus10008987 [exp]	3.0	0.8762
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10003308 [exp]	4.0	0.8560
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012319 [exp]	4.9	0.8761
AT5G01760			ENTH/VHS/GAT family protein (....		Lus10022753 [exp]	6.2	0.8373
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Lus10018442 [exp]	6.5	0.8563
AT3G60540			Preprotein translocase Sec, Se...		Lus10025029 [exp]	6.7	0.8401
AT5G16110			unknown protein		Lus10028474 [exp]	6.7	0.8614
AT3G09830			Protein kinase superfamily pro...		Lus10038711 [exp]	7.4	0.8432

Compare expression of checked genes

Lus10024821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.