Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22130 142 / 4e-40 MADS AGL104 AGAMOUS-like 104 (.1) AT1G77950 135 / 2e-38 MADS AGL67 AGAMOUS-like 67 (.1.2) AT1G77980 137 / 4e-38 MADS AGL66 AGAMOUS-like 66 (.1) AT3G58780 103 / 5e-26 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT4G09960 102 / 7e-26 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT2G45660 100 / 3e-25 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT1G18750 103 / 4e-25 MADS AGL65, AGL102 AGAMOUS-like 65 (.1.2) AT2G42830 100 / 7e-25 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT4G18960 99 / 3e-24 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT3G30260 97 / 1e-23 MADS AGL79 AGAMOUS-like 79 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018714 [exp] 363 / 2e-127 AT1G22130 122 / 7e-33 AGAMOUS-like 104 (.1) Lus10016810 [exp] 151 / 1e-43 AT1G22130 239 / 5e-77 AGAMOUS-like 104 (.1) Lus10022506 [exp] 142 / 1e-39 AT1G22130 277 / 1e-91 AGAMOUS-like 104 (.1) Lus10005302 [exp] 104 / 2e-26 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10019089 [exp] 105 / 1e-25 AT1G18750 279 / 3e-91 AGAMOUS-like 65 (.1.2) Lus10026679 [exp] 102 / 1e-25 AT1G69120 338 / 1e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10008264 [exp] 102 / 2e-25 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10017871 [exp] 99 / 3e-25 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10021140 [exp] 101 / 5e-25 AT5G60910 291 / 1e-99 FRUITFULL, AGAMOUS-like 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G087500 [exp] 146 / 3e-41 AT1G22130 229 / 9e-73 AGAMOUS-like 104 (.1) Potri.002G092300 [exp] 142 / 7e-40 AT1G22130 313 / 1e-105 AGAMOUS-like 104 (.1) Potri.008G088200 [exp] 109 / 4e-27 AT2G03060 297 / 4e-98 AGAMOUS-like 30 (.1.2) Potri.011G075800 [exp] 105 / 5e-27 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.004G064300 [exp] 104 / 1e-26 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.004G115400 [exp] 104 / 2e-26 AT5G60910 230 / 7e-76 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.013G104900 [exp] 102 / 6e-26 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.019G077200 [exp] 101 / 1e-25 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.001G058200 [exp] 100 / 2e-25 AT2G03710 156 / 3e-48 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.002G151700 [exp] 98 / 2e-24 AT2G45660 212 / 8e-70 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10024823 pacid=23178832 polypeptide=Lus10024823 locus=Lus10024823.g ID=Lus10024823.BGIv1.0 annot-version=v1.0 ATGGGAAGAGTAAAGGTTCAGATGAAGAGAATAGAGAACACGACCAACAGACAAGTGACGTTTTCAAAGAGAAGAAATGGATTCATTAAGAAAGTTTATG AACTCTCTGTTCTCTGCGATGTCGATGTTGCGCTCATCATGTTTTCCCCTTCCGGCAGGCTCAGCTTCTTCTCTGCAGGAAATCAAAGCATTGAAGAGAT CCTAAGTCGATATGTACATCTTCCTGAGCATGAACGAGGACGCTCCGGTGGATTCCCAAATACGTCGGAATGCGAATTTCAGGAGTTTGAGCAAGGAATG CGTAGATTAAGAACCCAGATGGAGGATGCACATAAACAACTAAGGATATTGGAAGGAAATGTTACCCACATAACAACGTTATATGAGGCTGAGTACCAGG AGCAGATCCTCCAGGATGCTCTCAAACGCATTCTCATCCGCAAGCAAAGTTTGGAGCAAAAGTTGGTATCATCAGATGCTGACAACCTCATGATCACGCA GCAAGCACCATCACCATCCTTTGTCATGGACTGGATTCCTTCCCCACAGCTCCAAAGCTTAAACTTCTTGGAAGACTCTTCTACCCTCAGAGACCACACA GTACTGGATGCAGCTGATCAGCATCAAGTAATGTCGCCACCACTTTGTTTGGAACATCAGAACAACAATGGCGGCGATCCTCATGCTCATCATTGGGGTC ACTTTGACAACTCACTAGTACTCTCTAATCATAATCATCAGTACTCCGAGGGACTGAGTTTCGTCGCTACTGATGAAATGCCAAGGCACAACGGTACAAG CTGGGAAGAGCTGCTGTTGAACAACAACATCGATAATCTCGGATTTCCAAGAACAAACGCACCATCATCCTCATGA
AA sequence Show only first row Show all	>Lus10024823 pacid=23178832 polypeptide=Lus10024823 locus=Lus10024823.g ID=Lus10024823.BGIv1.0 annot-version=v1.0 MGRVKVQMKRIENTTNRQVTFSKRRNGFIKKVYELSVLCDVDVALIMFSPSGRLSFFSAGNQSIEEILSRYVHLPEHERGRSGGFPNTSECEFQEFEQGM RRLRTQMEDAHKQLRILEGNVTHITTLYEAEYQEQILQDALKRILIRKQSLEQKLVSSDADNLMITQQAPSPSFVMDWIPSPQLQSLNFLEDSSTLRDHT VLDAADQHQVMSPPLCLEHQNNNGGDPHAHHWGHFDNSLVLSNHNHQYSEGLSFVATDEMPRHNGTSWEELLLNNNIDNLGFPRTNAPSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10024823 [exp]	0	1

Compare expression of checked genes

Lus10024823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.