Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62440 77 / 2e-16 Protein of unknown function (DUF3223) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009570 [exp] 557 / 0 AT5G62440 88 / 7e-20 Protein of unknown function (DUF3223) (.1) Lus10024794 [exp] 464 / 9e-164 AT5G62440 95 / 1e-22 Protein of unknown function (DUF3223) (.1) Lus10024968 [exp] 419 / 3e-145 AT5G62440 90 / 1e-20 Protein of unknown function (DUF3223) (.1) Lus10011903 [exp] 293 / 1e-95 AT5G62440 96 / 1e-22 Protein of unknown function (DUF3223) (.1) Lus10002053 [exp] 207 / 7e-63 AT5G62440 98 / 2e-23 Protein of unknown function (DUF3223) (.1) Lus10023594 [exp] 169 / 9e-50 AT5G62440 96 / 1e-23 Protein of unknown function (DUF3223) (.1) Lus10022837 [exp] 134 / 4e-35 AT5G62440 86 / 4e-19 Protein of unknown function (DUF3223) (.1) Lus10021669 [exp] 85 / 3e-19 AT5G62440 180 / 1e-57 Protein of unknown function (DUF3223) (.1) Lus10035009 [exp] 84 / 8e-19 AT5G62440 179 / 5e-57 Protein of unknown function (DUF3223) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033100 [exp] 76 / 2e-15 AT5G62440 181 / 2e-57 Protein of unknown function (DUF3223) (.1) Potri.013G022500 [exp] 69 / 3e-13 AT5G62440 148 / 7e-45 Protein of unknown function (DUF3223) (.1) Potri.013G021800 [exp] 59 / 3e-10 AT5G62440 156 / 9e-49 Protein of unknown function (DUF3223) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11523 [flax] [poplar] DUF3223 Protein of unknown function (DUF3223)
Representative CDS sequence Show only first row Show all	>Lus10024824 pacid=23178877 polypeptide=Lus10024824 locus=Lus10024824.g ID=Lus10024824.BGIv1.0 annot-version=v1.0 ATGGTTGTTAGGGAAGACGATTCCAAGGAGGATTTTTGCTACAGAAGCTGTGTAAACAATATCCTTCCATTGCCTGAGGATTTGAAAGATCAAGGTAGCG GTGTTGTCGCTGTTTGTGGATGTCATGTAGAAGGAGGCATGCAGGGTTTGCACAGGAGAAGATCAGCCGAGCTTTCTGAAATATATAAACGACTTAAACA AGACCGAGAAGCCAAGCTAGACGAAGAGGCGGTGAAATTGGTCTCCTTGGGTCCAAAGAAATTCAGGTCCTCCCATCAGATGTATTGGTTCTTTTTCAAC TTGCTTCTCAGGTTGCCGCTTAATGAGGCTCTCGTCGAGGAGAATGCCCACGAGATGTTACATGATTTACTGAAGAAGGGCGATCCAGAATCGGGGAAAA AGATTGGTTCTTCTTCTGGTGTCGAATCATTTCAAGTTCGAATCCATCCAGGATATGGTGGTAATCTGCGAAGCTTCTACTTTGTTAGAGGAGATGGTTC CATGGAGGATTTCTGTTTCATTAAGTGCGTTGACGGCATCTTTCCCATTCCAGAGAAAGCCAACAGATTATATGTTGGTCCTTGTAGCTGTCATCATGAA CAAGACTCTGAAGGTGTTGTCACCTTTGGTTGGTGGAAATTCTGGAGTTCCAATCGAATTGTTTCGTTTTTCGCATCGTTGCTTAACGATTATTTGCAAG GTTTTGATCCTCTCGCCGACCGGTTTGGTCCAAGACTTAACCGAACGGCAGTGTTGGATTTTCTGAAGAAGGGTGATCCAGAGACGTGGGAGAAGAAGAT GGGTTCTGGAGGGGGTATCCAGTCAATCAAAATGCAAACCCACACAAACAGAGAAATTGGTAGGTTGGGACACTATTTATTCGTCGTTGTTAGGAGCGAT GGTTCGGCGGAATCTTTCTGCTCCTGGACATGCATGAACAACCTGTCTTCCCTGCTTGAAGGAGGAGGAGCCAATGGTGGCGCTGGTGGAGGAAGCCGTC CTCGCAATGAAGGAAGAGCCAAAAGTGGCGCTGGTGGAGGAAGCAGACGCCGTAGCTCTCGCCTACGTGCTTTGGTTTGA
AA sequence Show only first row Show all	>Lus10024824 pacid=23178877 polypeptide=Lus10024824 locus=Lus10024824.g ID=Lus10024824.BGIv1.0 annot-version=v1.0 MVVREDDSKEDFCYRSCVNNILPLPEDLKDQGSGVVAVCGCHVEGGMQGLHRRRSAELSEIYKRLKQDREAKLDEEAVKLVSLGPKKFRSSHQMYWFFFN LLLRLPLNEALVEENAHEMLHDLLKKGDPESGKKIGSSSGVESFQVRIHPGYGGNLRSFYFVRGDGSMEDFCFIKCVDGIFPIPEKANRLYVGPCSCHHE QDSEGVVTFGWWKFWSSNRIVSFFASLLNDYLQGFDPLADRFGPRLNRTAVLDFLKKGDPETWEKKMGSGGGIQSIKMQTHTNREIGRLGHYLFVVVRSD GSAESFCSWTCMNNLSSLLEGGGANGGAGGGSRPRNEGRAKSGAGGGSRRRSSRLRALV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62440			Protein of unknown function (D...		Lus10024824 [exp]	0	1
AT5G62440			Protein of unknown function (D...		Lus10024794 [exp]	1.0	0.7406
AT2G30460			Nucleotide/sugar transporter f...		Lus10008596 [exp]	2.4	0.5757
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10026686 [exp]	10.0	0.5381
AT3G04570	AT-hook	AHL19	AT-hook motif nuclear-localize...		Lus10042551 [exp]	20.5	0.5016
AT5G61000		ATRPA70D	Replication factor-A protein 1...		Lus10003025 [exp]	20.7	0.5890
AT4G40042			Microsomal signal peptidase 12...		Lus10037014 [exp]	26.4	0.5654
AT5G44450			methyltransferases (.1)		Lus10028142 [exp]	39.6	0.4734
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10027836 [exp]	58.0	0.4682
AT3G06240			F-box family protein (.1)		Lus10011015 [exp]	91.2	0.4647
AT1G18530			EF hand calcium-binding protei...		Lus10038953 [exp]	93.2	0.4515

Compare expression of checked genes

Lus10024824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.