Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018742 [exp] 121 / 6e-36 ND 39 / 0.001 Lus10024827 [exp] 114 / 5e-33 ND 40 / 3e-04 Lus10022828 [exp] 38 / 0.0005 AT2G01660 43 / 2e-05 plasmodesmata-located protein 6 (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10024825 pacid=23178845 polypeptide=Lus10024825 locus=Lus10024825.g ID=Lus10024825.BGIv1.0 annot-version=v1.0 ATGACTTGTTACTCTTGCAAAGTAGTGATCTTCCTGGTCGTTGCCAGCGTGGCTATGACGGGCGGTACAGGAGACGACGTCGGCGAGGTTAAATCTTTTG GTTGTAACGTGAAATCGGAGGTGGTTGCCGCCGGTGGGCAATATGAGAAGGATATAAAGGAAGTTGTGAAGAAGTTGGCGAAATGCACCGATACAGGTGG CCAAAGCGGGGATTGCGGAGTCGAAGTTCCGAATTCGGGGAATCCCAGAATCACGGGACATGGGCAGTGTACAGTTAGCAGTGGAACTGAAGCTAACTGC GAAAATTGCTTGAAGGCTGCTGGTCGGTACCTTATCTCCAACTGTCGCTTCACTGAGGCTGACGTTATATATAATCATTGTTCTATGAGCTATAACTCCA GAGGCCTTTGA
AA sequence Show only first row Show all	>Lus10024825 pacid=23178845 polypeptide=Lus10024825 locus=Lus10024825.g ID=Lus10024825.BGIv1.0 annot-version=v1.0 MTCYSCKVVIFLVVASVAMTGGTGDDVGEVKSFGCNVKSEVVAAGGQYEKDIKEVVKKLAKCTDTGGQSGDCGVEVPNSGNPRITGHGQCTVSSGTEANC ENCLKAAGRYLISNCRFTEADVIYNHCSMSYNSRGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024825 [exp]	0	1
AT4G18040		LSP1, CUM1, AT....	eukaryotic translation Initiat...		Lus10002785 [exp]	1.4	0.8100
AT1G62660			Glycosyl hydrolases family 32 ...		Lus10030278 [exp]	6.2	0.8051
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10039138 [exp]	9.5	0.7348
AT5G64410		ATOPT4	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10035644 [exp]	9.8	0.6841
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10023106 [exp]	12.4	0.6671
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021543 [exp]	34.5	0.5916
AT2G02850		ARPN	plantacyanin (.1)		Lus10028396 [exp]	35.2	0.5916
AT2G46530	ARF	ARF11	auxin response factor 11 (.1.2...		Lus10030240 [exp]	36.0	0.5916
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10041332 [exp]	36.7	0.5916
AT5G58660			2-oxoglutarate (2OG) and Fe(II...		Lus10031865 [exp]	37.5	0.5916

Compare expression of checked genes

Lus10024825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.